miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24230 5' -59.6 NC_005263.2 + 690 1.1 0.00031
Target:  5'- gCUCGGUGAGCGCGAUCGUGCCGCCGCc -3'
miRNA:   3'- -GAGCCACUCGCGCUAGCACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 8737 0.68 0.353288
Target:  5'- aCUCGGcGAGCGgGGUCGaGacguuuuuaaCGCUGCg -3'
miRNA:   3'- -GAGCCaCUCGCgCUAGCaCg---------GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 33467 0.68 0.353288
Target:  5'- aCUCGGUcAGCGUGAUCacgaGCCcuucGUCGCg -3'
miRNA:   3'- -GAGCCAcUCGCGCUAGca--CGG----CGGCG- -5'
24230 5' -59.6 NC_005263.2 + 22731 0.66 0.480652
Target:  5'- -gCGGcgcaUGAGCGCaccGAUCaG-GCCGCCGa -3'
miRNA:   3'- gaGCC----ACUCGCG---CUAG-CaCGGCGGCg -5'
24230 5' -59.6 NC_005263.2 + 23903 0.72 0.184905
Target:  5'- gCUC-GUGAGCGCGcccgcgagCGUGaCCGUCGCu -3'
miRNA:   3'- -GAGcCACUCGCGCua------GCAC-GGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 20725 0.72 0.194836
Target:  5'- -cCGGUcAGCGCGc-CGgccGCCGCCGCg -3'
miRNA:   3'- gaGCCAcUCGCGCuaGCa--CGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 35979 0.7 0.251698
Target:  5'- gUCGucaUGAGCGCGAUCuGUGCauucagGCCGUc -3'
miRNA:   3'- gAGCc--ACUCGCGCUAG-CACGg-----CGGCG- -5'
24230 5' -59.6 NC_005263.2 + 29128 0.7 0.25808
Target:  5'- gUCGGccGAGCGaaaccaGAcgUCGUGCCgGCUGCg -3'
miRNA:   3'- gAGCCa-CUCGCg-----CU--AGCACGG-CGGCG- -5'
24230 5' -59.6 NC_005263.2 + 44330 0.69 0.313952
Target:  5'- gUCGGcGuGUGgGAgaacacCGUGCCGCUGCc -3'
miRNA:   3'- gAGCCaCuCGCgCUa-----GCACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 20018 0.68 0.345149
Target:  5'- aUCGGcc-GCGCcaacacacggGAUCGUGCCGCgCGUu -3'
miRNA:   3'- gAGCCacuCGCG----------CUAGCACGGCG-GCG- -5'
24230 5' -59.6 NC_005263.2 + 21375 0.69 0.329278
Target:  5'- aCUCGacGUGAugGUGCGcuUCGcGCUGCCGCa -3'
miRNA:   3'- -GAGC--CACU--CGCGCu-AGCaCGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 38495 0.69 0.299172
Target:  5'- aUCcGUG-GCGCGAcgcgaugaUCGcGCUGCCGCa -3'
miRNA:   3'- gAGcCACuCGCGCU--------AGCaCGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 27231 0.82 0.036027
Target:  5'- gCUC-GUGAGCGUGAUCGcGCCGCCGg -3'
miRNA:   3'- -GAGcCACUCGCGCUAGCaCGGCGGCg -5'
24230 5' -59.6 NC_005263.2 + 9507 0.69 0.329278
Target:  5'- aUCGcGUGcGCGgGcugaAUCGUGCgGCCGUg -3'
miRNA:   3'- gAGC-CACuCGCgC----UAGCACGgCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 29070 0.78 0.079567
Target:  5'- cCUCGGggcGGCGCGcAUCG-GCCGUCGCu -3'
miRNA:   3'- -GAGCCac-UCGCGC-UAGCaCGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 46801 0.7 0.282848
Target:  5'- cCUCGaguuugcgcgcaacGUGAGCGCGAUCuuuCgCGCCGCu -3'
miRNA:   3'- -GAGC--------------CACUCGCGCUAGcacG-GCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 31645 0.68 0.343537
Target:  5'- uCUCGGUGuucgucAGUGCGAguaccaugccagCGagGcCCGCCGCg -3'
miRNA:   3'- -GAGCCAC------UCGCGCUa-----------GCa-C-GGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 30345 0.68 0.353288
Target:  5'- -gCGcGUgccGAGCGCGGcCGcGCUGCCGCc -3'
miRNA:   3'- gaGC-CA---CUCGCGCUaGCaCGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 16042 0.74 0.144401
Target:  5'- -aCGuuGUGAGCGUGccaucgucaaacacGUcCGUGCCGCCGCg -3'
miRNA:   3'- gaGC--CACUCGCGC--------------UA-GCACGGCGGCG- -5'
24230 5' -59.6 NC_005263.2 + 45462 0.71 0.245446
Target:  5'- cCUCGaGcccGGCGCGAaCGUGCCGaUCGCg -3'
miRNA:   3'- -GAGC-Cac-UCGCGCUaGCACGGC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.