miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24231 5' -58 NC_005263.2 + 363 0.66 0.468606
Target:  5'- uCGGCGCu---UUGAACAGCUGCAg-- -3'
miRNA:   3'- -GCCGCGuccuGGCUUGUCGACGUgaa -5'
24231 5' -58 NC_005263.2 + 813 1.05 0.000738
Target:  5'- cCGGCGCAGGACCGAACAGCUGCACUUc -3'
miRNA:   3'- -GCCGCGUCCUGGCUUGUCGACGUGAA- -5'
24231 5' -58 NC_005263.2 + 1644 0.66 0.499477
Target:  5'- gCGGCGUAGccCUGGAUGcGCUGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGU-CGACGUGaa -5'
24231 5' -58 NC_005263.2 + 2354 0.72 0.208464
Target:  5'- aCGGCGCAcGACCugccgacggcGAACGcGCUGCGCUc -3'
miRNA:   3'- -GCCGCGUcCUGG----------CUUGU-CGACGUGAa -5'
24231 5' -58 NC_005263.2 + 3552 0.67 0.423267
Target:  5'- aCGGCGaAGGACaguaCGAGCaacgcuacauggucaAGCUGCACg- -3'
miRNA:   3'- -GCCGCgUCCUG----GCUUG---------------UCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 6107 0.68 0.374435
Target:  5'- aGGCGguGaguucguacgauucGACCGAACGuuauccgcguucgguGCUGCGCUUc -3'
miRNA:   3'- gCCGCguC--------------CUGGCUUGU---------------CGACGUGAA- -5'
24231 5' -58 NC_005263.2 + 6505 0.66 0.499477
Target:  5'- aGGCGUcaAGGAUUGAAaCAGCgaaagcgGCGCg- -3'
miRNA:   3'- gCCGCG--UCCUGGCUU-GUCGa------CGUGaa -5'
24231 5' -58 NC_005263.2 + 6628 0.68 0.35617
Target:  5'- uCGGCGCGG--UCGAGCAGUcGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGUCGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 7048 0.66 0.475723
Target:  5'- uGGCGCaucgcgccaauggcAGGugCGAGC-GCUGCGa-- -3'
miRNA:   3'- gCCGCG--------------UCCugGCUUGuCGACGUgaa -5'
24231 5' -58 NC_005263.2 + 7916 0.66 0.468606
Target:  5'- gGGCGCGGuGAucuuccgcCCGuucGCGGUUGCGCa- -3'
miRNA:   3'- gCCGCGUC-CU--------GGCu--UGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 10063 0.7 0.292457
Target:  5'- uGGCGCGcaagacGGcgaACCGGACGGCgUGCGCa- -3'
miRNA:   3'- gCCGCGU------CC---UGGCUUGUCG-ACGUGaa -5'
24231 5' -58 NC_005263.2 + 10152 0.71 0.257362
Target:  5'- cCGGCGCGGcAUCGGcCGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUuGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 10252 0.73 0.177244
Target:  5'- gGGCGCAGGcgcGCCGccGGCAGCcggUGCGCa- -3'
miRNA:   3'- gCCGCGUCC---UGGC--UUGUCG---ACGUGaa -5'
24231 5' -58 NC_005263.2 + 12706 0.66 0.499477
Target:  5'- cCGGCGUAgGGGCCGucCGGCUcgguguucagccGCGCc- -3'
miRNA:   3'- -GCCGCGU-CCUGGCuuGUCGA------------CGUGaa -5'
24231 5' -58 NC_005263.2 + 13847 0.72 0.1923
Target:  5'- -cGCGCGGuACuCGGGCAGCUGCGCg- -3'
miRNA:   3'- gcCGCGUCcUG-GCUUGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 14106 0.66 0.509968
Target:  5'- gCGGCGCccguGGCCGAACcgucgccgucGCUGCGCc- -3'
miRNA:   3'- -GCCGCGuc--CUGGCUUGu---------CGACGUGaa -5'
24231 5' -58 NC_005263.2 + 14792 0.68 0.38877
Target:  5'- -cGCGCGGGAagaucgcgccaaauUCGGACAGCgGCACc- -3'
miRNA:   3'- gcCGCGUCCU--------------GGCUUGUCGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 15868 0.67 0.448578
Target:  5'- aCGGUGUcGGA-CGAGCAGC-GCGCa- -3'
miRNA:   3'- -GCCGCGuCCUgGCUUGUCGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 16920 0.69 0.307508
Target:  5'- gCGGCGCGGcGCCGGGCAggucgaaguGCUGuCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUUGU---------CGAC-GUGaa -5'
24231 5' -58 NC_005263.2 + 17748 0.66 0.509968
Target:  5'- uCGGUGCGGucgaGCgCGAGCAGCgugaGCGCg- -3'
miRNA:   3'- -GCCGCGUCc---UG-GCUUGUCGa---CGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.