miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24231 5' -58 NC_005263.2 + 813 1.05 0.000738
Target:  5'- cCGGCGCAGGACCGAACAGCUGCACUUc -3'
miRNA:   3'- -GCCGCGUCCUGGCUUGUCGACGUGAA- -5'
24231 5' -58 NC_005263.2 + 22899 0.66 0.499477
Target:  5'- aCGGCGUucguGCCGGACggaggugcccaAGCUGCGCg- -3'
miRNA:   3'- -GCCGCGucc-UGGCUUG-----------UCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 12706 0.66 0.499477
Target:  5'- cCGGCGUAgGGGCCGucCGGCUcgguguucagccGCGCc- -3'
miRNA:   3'- -GCCGCGU-CCUGGCuuGUCGA------------CGUGaa -5'
24231 5' -58 NC_005263.2 + 21635 0.66 0.509968
Target:  5'- gCGGCGCcGGAaugggCGAAUugGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGuCCUg----GCUUG--UCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 6628 0.68 0.35617
Target:  5'- uCGGCGCGG--UCGAGCAGUcGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGUCGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 25251 0.68 0.382454
Target:  5'- aGGCuuguacGCAGcACCGAuCAGCUGCAUg- -3'
miRNA:   3'- gCCG------CGUCcUGGCUuGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 14792 0.68 0.38877
Target:  5'- -cGCGCGGGAagaucgcgccaaauUCGGACAGCgGCACc- -3'
miRNA:   3'- gcCGCGUCCU--------------GGCUUGUCGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 20898 0.67 0.409998
Target:  5'- aGGCGCAcGGgaugacGCCGGAUGGCgUGUACg- -3'
miRNA:   3'- gCCGCGU-CC------UGGCUUGUCG-ACGUGaa -5'
24231 5' -58 NC_005263.2 + 20958 0.67 0.448578
Target:  5'- cCGcGCGCugucGGacaucGCCGAcGCGGCUGCGCg- -3'
miRNA:   3'- -GC-CGCGu---CC-----UGGCU-UGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 6505 0.66 0.499477
Target:  5'- aGGCGUcaAGGAUUGAAaCAGCgaaagcgGCGCg- -3'
miRNA:   3'- gCCGCG--UCCUGGCUU-GUCGa------CGUGaa -5'
24231 5' -58 NC_005263.2 + 7048 0.66 0.475723
Target:  5'- uGGCGCaucgcgccaauggcAGGugCGAGC-GCUGCGa-- -3'
miRNA:   3'- gCCGCG--------------UCCugGCUUGuCGACGUgaa -5'
24231 5' -58 NC_005263.2 + 39236 0.67 0.448578
Target:  5'- cCGGCaGCAcGGGCCGcguaucccgucGGCcgAGCUGCGCg- -3'
miRNA:   3'- -GCCG-CGU-CCUGGC-----------UUG--UCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 13847 0.72 0.1923
Target:  5'- -cGCGCGGuACuCGGGCAGCUGCGCg- -3'
miRNA:   3'- gcCGCGUCcUG-GCUUGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 43643 0.66 0.489082
Target:  5'- cCGcGCGCAcGGACgaaGAAguGCUcGCACUg -3'
miRNA:   3'- -GC-CGCGU-CCUGg--CUUguCGA-CGUGAa -5'
24231 5' -58 NC_005263.2 + 10152 0.71 0.257362
Target:  5'- cCGGCGCGGcAUCGGcCGGUUGCGCa- -3'
miRNA:   3'- -GCCGCGUCcUGGCUuGUCGACGUGaa -5'
24231 5' -58 NC_005263.2 + 45740 0.67 0.41945
Target:  5'- uCGGUGCugAGGGuuGGcACGGCcUGCGCUg -3'
miRNA:   3'- -GCCGCG--UCCUggCU-UGUCG-ACGUGAa -5'
24231 5' -58 NC_005263.2 + 1644 0.66 0.499477
Target:  5'- gCGGCGUAGccCUGGAUGcGCUGCGCg- -3'
miRNA:   3'- -GCCGCGUCcuGGCUUGU-CGACGUGaa -5'
24231 5' -58 NC_005263.2 + 36039 0.66 0.499477
Target:  5'- gCGGuCGCcuugauGGGAaucaCGAucaggcucACAGCUGCACUa -3'
miRNA:   3'- -GCC-GCG------UCCUg---GCU--------UGUCGACGUGAa -5'
24231 5' -58 NC_005263.2 + 30791 0.7 0.29991
Target:  5'- cCGGCGCcGGGCCGAAUucGC-GCGCc- -3'
miRNA:   3'- -GCCGCGuCCUGGCUUGu-CGaCGUGaa -5'
24231 5' -58 NC_005263.2 + 41780 0.68 0.382454
Target:  5'- uCGGCGCGGGcgacucgcgcGCCGGACuaugGGuUUGCACg- -3'
miRNA:   3'- -GCCGCGUCC----------UGGCUUG----UC-GACGUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.