Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24238 | 5' | -54.6 | NC_005263.2 | + | 17401 | 0.66 | 0.703081 |
Target: 5'- -cGGccgCGCGCCugGCGgGCGGUGUCGc- -3' miRNA: 3'- caCUa--GCGCGG--CGCgUGCUAUAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 17493 | 0.69 | 0.54809 |
Target: 5'- cUGAUCGCGCgCG-GCGCGucgAUCGa- -3' miRNA: 3'- cACUAGCGCG-GCgCGUGCua-UAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 17520 | 0.72 | 0.36884 |
Target: 5'- cUGAUCGCGCUguacaGCGCGCGcagcggCGUGa -3' miRNA: 3'- cACUAGCGCGG-----CGCGUGCuaua--GCAC- -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 18759 | 0.68 | 0.592082 |
Target: 5'- -cGAUCGUaggcggcgcgguGCuCGCGCugGuUAUCGUGc -3' miRNA: 3'- caCUAGCG------------CG-GCGCGugCuAUAGCAC- -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 19744 | 0.66 | 0.724787 |
Target: 5'- -cGAUCgGCGCuggCGCGCugGcgGcgcUCGUGg -3' miRNA: 3'- caCUAG-CGCG---GCGCGugCuaU---AGCAC- -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 19931 | 0.7 | 0.453698 |
Target: 5'- -aGAagGCGCCGCGCuauuCGAcGUCGg- -3' miRNA: 3'- caCUagCGCGGCGCGu---GCUaUAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 20016 | 0.72 | 0.38674 |
Target: 5'- -cGAUCG-GCCGCGCcaacacACGggAUCGUGc -3' miRNA: 3'- caCUAGCgCGGCGCG------UGCuaUAGCAC- -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 23820 | 0.76 | 0.227922 |
Target: 5'- uUGAUCGuCGCCGCGaaaGCGccgGUCGUGu -3' miRNA: 3'- cACUAGC-GCGGCGCg--UGCua-UAGCAC- -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 24619 | 0.66 | 0.703081 |
Target: 5'- aGUGGUaCGCGauGUccaucggauGCGCGAUGUCGUa -3' miRNA: 3'- -CACUA-GCGCggCG---------CGUGCUAUAGCAc -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 25645 | 0.68 | 0.614321 |
Target: 5'- uUGAUCGCGCUGuCGCugcCGuUGUUGUa -3' miRNA: 3'- cACUAGCGCGGC-GCGu--GCuAUAGCAc -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 25730 | 0.69 | 0.505176 |
Target: 5'- cUGGcgcugCGCGCCGUGCACGAccUGUCc-- -3' miRNA: 3'- cACUa----GCGCGGCGCGUGCU--AUAGcac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 26923 | 0.7 | 0.453698 |
Target: 5'- ----cCGCGCCGCGCGCGuccgCGUc -3' miRNA: 3'- cacuaGCGCGGCGCGUGCuauaGCAc -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 27135 | 0.67 | 0.68109 |
Target: 5'- -gGcgCGCaGCCGCGUcgGCGAUGUCc-- -3' miRNA: 3'- caCuaGCG-CGGCGCG--UGCUAUAGcac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 27240 | 0.77 | 0.178722 |
Target: 5'- cGUGAUCGCGCCGCcgGC-CGAUAgCGUu -3' miRNA: 3'- -CACUAGCGCGGCG--CGuGCUAUaGCAc -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 29488 | 0.68 | 0.565585 |
Target: 5'- cUGGUCGgGCCGCuGCACGAacccgcgcauggcGUCGUu -3' miRNA: 3'- cACUAGCgCGGCG-CGUGCUa------------UAGCAc -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 30285 | 0.68 | 0.592082 |
Target: 5'- --aAUCGgGCCGCGCGCGGcAUCc-- -3' miRNA: 3'- cacUAGCgCGGCGCGUGCUaUAGcac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 30618 | 0.75 | 0.234046 |
Target: 5'- -cGA-CGCGCCGCGCGCGAUcagggCGUu -3' miRNA: 3'- caCUaGCGCGGCGCGUGCUAua---GCAc -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 33416 | 0.69 | 0.504121 |
Target: 5'- -cGAUCgccuugaGCGCCGCGCGCGcguagcgGUCGg- -3' miRNA: 3'- caCUAG-------CGCGGCGCGUGCua-----UAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 34821 | 0.66 | 0.692115 |
Target: 5'- cUGGcUGCGCaCGCGCcaguCGGUGUCGg- -3' miRNA: 3'- cACUaGCGCG-GCGCGu---GCUAUAGCac -5' |
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24238 | 5' | -54.6 | NC_005263.2 | + | 35636 | 0.66 | 0.724787 |
Target: 5'- ----gCGCGCCGC---CGGUAUCGUGu -3' miRNA: 3'- cacuaGCGCGGCGcguGCUAUAGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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