miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 5' -54.6 NC_005263.2 + 702 0.71 0.414641
Target:  5'- -cGAUCGUGCCGCcGCccGCGAgcgcCGUGg -3'
miRNA:   3'- caCUAGCGCGGCG-CG--UGCUaua-GCAC- -5'
24238 5' -54.6 NC_005263.2 + 1560 0.66 0.703081
Target:  5'- -cGuUCGUGuuGCGCACGGUAUa--- -3'
miRNA:   3'- caCuAGCGCggCGCGUGCUAUAgcac -5'
24238 5' -54.6 NC_005263.2 + 2235 0.67 0.636623
Target:  5'- -cGuUCGCGUaCGCGC-CGAUGUaCGUGu -3'
miRNA:   3'- caCuAGCGCG-GCGCGuGCUAUA-GCAC- -5'
24238 5' -54.6 NC_005263.2 + 2754 0.68 0.592082
Target:  5'- -aGAUCGCgGCCGcCGUGCcg-GUCGUGu -3'
miRNA:   3'- caCUAGCG-CGGC-GCGUGcuaUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 3349 0.68 0.614321
Target:  5'- -----gGCGCCGCGCGCGG--UCGa- -3'
miRNA:   3'- cacuagCGCGGCGCGUGCUauAGCac -5'
24238 5' -54.6 NC_005263.2 + 4321 1.07 0.001363
Target:  5'- uGUGAUCGCGCCGCGCACGAUAUCGUGc -3'
miRNA:   3'- -CACUAGCGCGGCGCGUGCUAUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 4856 0.67 0.658908
Target:  5'- -cGcgCGCGCCGUGC-CGAUGcCGcUGc -3'
miRNA:   3'- caCuaGCGCGGCGCGuGCUAUaGC-AC- -5'
24238 5' -54.6 NC_005263.2 + 6360 0.7 0.453698
Target:  5'- uUGAUCGCGCCGUGCcgccCGAaGUUGc- -3'
miRNA:   3'- cACUAGCGCGGCGCGu---GCUaUAGCac -5'
24238 5' -54.6 NC_005263.2 + 8937 0.66 0.735504
Target:  5'- gGUGAUCGgcauaccgaugcCGUCGCGCAUGucagcGUCGUu -3'
miRNA:   3'- -CACUAGC------------GCGGCGCGUGCua---UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 9617 0.67 0.625469
Target:  5'- --cAUCGCGUCGCGCcACGG-AUCGa- -3'
miRNA:   3'- cacUAGCGCGGCGCG-UGCUaUAGCac -5'
24238 5' -54.6 NC_005263.2 + 9754 0.67 0.670017
Target:  5'- -cGAUCGCGgUGCGCACcGAcuUCGc- -3'
miRNA:   3'- caCUAGCGCgGCGCGUG-CUauAGCac -5'
24238 5' -54.6 NC_005263.2 + 9784 0.68 0.592082
Target:  5'- -cGGUCGCG-CGCGCAuCGAUcucAUCGa- -3'
miRNA:   3'- caCUAGCGCgGCGCGU-GCUA---UAGCac -5'
24238 5' -54.6 NC_005263.2 + 10746 0.66 0.724787
Target:  5'- --aGUCGCGCaCGCGCAUGcgGcCGUc -3'
miRNA:   3'- cacUAGCGCG-GCGCGUGCuaUaGCAc -5'
24238 5' -54.6 NC_005263.2 + 10933 0.74 0.280846
Target:  5'- cGUGAUCGCGUCGUGCGgGGUGagcgcuUCGa- -3'
miRNA:   3'- -CACUAGCGCGGCGCGUgCUAU------AGCac -5'
24238 5' -54.6 NC_005263.2 + 11516 0.66 0.713975
Target:  5'- cUGGUCGCGCgCGaugaaggcgGCGCGGUucGUCGUc -3'
miRNA:   3'- cACUAGCGCG-GCg--------CGUGCUA--UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 11592 0.67 0.68109
Target:  5'- -aGGUCGCGCC-C-CGCGAUGaaGUGg -3'
miRNA:   3'- caCUAGCGCGGcGcGUGCUAUagCAC- -5'
24238 5' -54.6 NC_005263.2 + 11800 0.67 0.68109
Target:  5'- -cGAaCGCGCCggucgucacuucGCGCGCGAacgUGUCGa- -3'
miRNA:   3'- caCUaGCGCGG------------CGCGUGCU---AUAGCac -5'
24238 5' -54.6 NC_005263.2 + 12176 0.69 0.526469
Target:  5'- -cGAUCGCgGCCGUGuCGCGAUGaagCGg- -3'
miRNA:   3'- caCUAGCG-CGGCGC-GUGCUAUa--GCac -5'
24238 5' -54.6 NC_005263.2 + 14069 0.72 0.38674
Target:  5'- uUGAgCGCGCCGCGC-CGGcccaUGUCGg- -3'
miRNA:   3'- cACUaGCGCGGCGCGuGCU----AUAGCac -5'
24238 5' -54.6 NC_005263.2 + 15180 0.67 0.636623
Target:  5'- aGUGAUCGacgcgaGCgCGcCGCGCGAcGUCGg- -3'
miRNA:   3'- -CACUAGCg-----CG-GC-GCGUGCUaUAGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.