miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 5' -54.6 NC_005263.2 + 4321 1.07 0.001363
Target:  5'- uGUGAUCGCGCCGCGCACGAUAUCGUGc -3'
miRNA:   3'- -CACUAGCGCGGCGCGUGCUAUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 2235 0.67 0.636623
Target:  5'- -cGuUCGCGUaCGCGC-CGAUGUaCGUGu -3'
miRNA:   3'- caCuAGCGCG-GCGCGuGCUAUA-GCAC- -5'
24238 5' -54.6 NC_005263.2 + 4856 0.67 0.658908
Target:  5'- -cGcgCGCGCCGUGC-CGAUGcCGcUGc -3'
miRNA:   3'- caCuaGCGCGGCGCGuGCUAUaGC-AC- -5'
24238 5' -54.6 NC_005263.2 + 10746 0.66 0.724787
Target:  5'- --aGUCGCGCaCGCGCAUGcgGcCGUc -3'
miRNA:   3'- cacUAGCGCG-GCGCGUGCuaUaGCAc -5'
24238 5' -54.6 NC_005263.2 + 17520 0.72 0.36884
Target:  5'- cUGAUCGCGCUguacaGCGCGCGcagcggCGUGa -3'
miRNA:   3'- cACUAGCGCGG-----CGCGUGCuaua--GCAC- -5'
24238 5' -54.6 NC_005263.2 + 14069 0.72 0.38674
Target:  5'- uUGAgCGCGCCGCGC-CGGcccaUGUCGg- -3'
miRNA:   3'- cACUaGCGCGGCGCGuGCU----AUAGCac -5'
24238 5' -54.6 NC_005263.2 + 702 0.71 0.414641
Target:  5'- -cGAUCGUGCCGCcGCccGCGAgcgcCGUGg -3'
miRNA:   3'- caCUAGCGCGGCG-CG--UGCUaua-GCAC- -5'
24238 5' -54.6 NC_005263.2 + 42128 0.7 0.463772
Target:  5'- --cGUCGUGCUGCGCgACGAgg-CGUGu -3'
miRNA:   3'- cacUAGCGCGGCGCG-UGCUauaGCAC- -5'
24238 5' -54.6 NC_005263.2 + 37356 0.69 0.54809
Target:  5'- -cGGUCGCgGCCGUGCuCGAUGcgcUCGa- -3'
miRNA:   3'- caCUAGCG-CGGCGCGuGCUAU---AGCac -5'
24238 5' -54.6 NC_005263.2 + 25645 0.68 0.614321
Target:  5'- uUGAUCGCGCUGuCGCugcCGuUGUUGUa -3'
miRNA:   3'- cACUAGCGCGGC-GCGu--GCuAUAGCAc -5'
24238 5' -54.6 NC_005263.2 + 30285 0.68 0.592082
Target:  5'- --aAUCGgGCCGCGCGCGGcAUCc-- -3'
miRNA:   3'- cacUAGCgCGGCGCGUGCUaUAGcac -5'
24238 5' -54.6 NC_005263.2 + 12176 0.69 0.526469
Target:  5'- -cGAUCGCgGCCGUGuCGCGAUGaagCGg- -3'
miRNA:   3'- caCUAGCG-CGGCGC-GUGCUAUa--GCac -5'
24238 5' -54.6 NC_005263.2 + 27240 0.77 0.178722
Target:  5'- cGUGAUCGCGCCGCcgGC-CGAUAgCGUu -3'
miRNA:   3'- -CACUAGCGCGGCG--CGuGCUAUaGCAc -5'
24238 5' -54.6 NC_005263.2 + 2754 0.68 0.592082
Target:  5'- -aGAUCGCgGCCGcCGUGCcg-GUCGUGu -3'
miRNA:   3'- caCUAGCG-CGGC-GCGUGcuaUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 23820 0.76 0.227922
Target:  5'- uUGAUCGuCGCCGCGaaaGCGccgGUCGUGu -3'
miRNA:   3'- cACUAGC-GCGGCGCg--UGCua-UAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 33416 0.69 0.504121
Target:  5'- -cGAUCgccuugaGCGCCGCGCGCGcguagcgGUCGg- -3'
miRNA:   3'- caCUAG-------CGCGGCGCGUGCua-----UAGCac -5'
24238 5' -54.6 NC_005263.2 + 37408 0.68 0.614321
Target:  5'- cGUGcAUCGCGUCGCGCGgcCGuccucGUCGUc -3'
miRNA:   3'- -CAC-UAGCGCGGCGCGU--GCua---UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 38267 0.67 0.647773
Target:  5'- -cGAgcaagCGCGCCGCGC-CGu--UCGUc -3'
miRNA:   3'- caCUa----GCGCGGCGCGuGCuauAGCAc -5'
24238 5' -54.6 NC_005263.2 + 30618 0.75 0.234046
Target:  5'- -cGA-CGCGCCGCGCGCGAUcagggCGUu -3'
miRNA:   3'- caCUaGCGCGGCGCGUGCUAua---GCAc -5'
24238 5' -54.6 NC_005263.2 + 20016 0.72 0.38674
Target:  5'- -cGAUCG-GCCGCGCcaacacACGggAUCGUGc -3'
miRNA:   3'- caCUAGCgCGGCGCG------UGCuaUAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.