miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 5' -54.6 NC_005263.2 + 4321 1.07 0.001363
Target:  5'- uGUGAUCGCGCCGCGCACGAUAUCGUGc -3'
miRNA:   3'- -CACUAGCGCGGCGCGUGCUAUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 27240 0.77 0.178722
Target:  5'- cGUGAUCGCGCCGCcgGC-CGAUAgCGUu -3'
miRNA:   3'- -CACUAGCGCGGCG--CGuGCUAUaGCAc -5'
24238 5' -54.6 NC_005263.2 + 23820 0.76 0.227922
Target:  5'- uUGAUCGuCGCCGCGaaaGCGccgGUCGUGu -3'
miRNA:   3'- cACUAGC-GCGGCGCg--UGCua-UAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 30618 0.75 0.234046
Target:  5'- -cGA-CGCGCCGCGCGCGAUcagggCGUu -3'
miRNA:   3'- caCUaGCGCGGCGCGUGCUAua---GCAc -5'
24238 5' -54.6 NC_005263.2 + 10933 0.74 0.280846
Target:  5'- cGUGAUCGCGUCGUGCGgGGUGagcgcuUCGa- -3'
miRNA:   3'- -CACUAGCGCGGCGCGUgCUAU------AGCac -5'
24238 5' -54.6 NC_005263.2 + 17520 0.72 0.36884
Target:  5'- cUGAUCGCGCUguacaGCGCGCGcagcggCGUGa -3'
miRNA:   3'- cACUAGCGCGG-----CGCGUGCuaua--GCAC- -5'
24238 5' -54.6 NC_005263.2 + 14069 0.72 0.38674
Target:  5'- uUGAgCGCGCCGCGC-CGGcccaUGUCGg- -3'
miRNA:   3'- cACUaGCGCGGCGCGuGCU----AUAGCac -5'
24238 5' -54.6 NC_005263.2 + 20016 0.72 0.38674
Target:  5'- -cGAUCG-GCCGCGCcaacacACGggAUCGUGc -3'
miRNA:   3'- caCUAGCgCGGCGCG------UGCuaUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 702 0.71 0.414641
Target:  5'- -cGAUCGUGCCGCcGCccGCGAgcgcCGUGg -3'
miRNA:   3'- caCUAGCGCGGCG-CG--UGCUaua-GCAC- -5'
24238 5' -54.6 NC_005263.2 + 38579 0.71 0.424212
Target:  5'- -cGGUCGCuGCCGCGCACGGc------ -3'
miRNA:   3'- caCUAGCG-CGGCGCGUGCUauagcac -5'
24238 5' -54.6 NC_005263.2 + 6360 0.7 0.453698
Target:  5'- uUGAUCGCGCCGUGCcgccCGAaGUUGc- -3'
miRNA:   3'- cACUAGCGCGGCGCGu---GCUaUAGCac -5'
24238 5' -54.6 NC_005263.2 + 19931 0.7 0.453698
Target:  5'- -aGAagGCGCCGCGCuauuCGAcGUCGg- -3'
miRNA:   3'- caCUagCGCGGCGCGu---GCUaUAGCac -5'
24238 5' -54.6 NC_005263.2 + 26923 0.7 0.453698
Target:  5'- ----cCGCGCCGCGCGCGuccgCGUc -3'
miRNA:   3'- cacuaGCGCGGCGCGUGCuauaGCAc -5'
24238 5' -54.6 NC_005263.2 + 42128 0.7 0.463772
Target:  5'- --cGUCGUGCUGCGCgACGAgg-CGUGu -3'
miRNA:   3'- cacUAGCGCGGCGCG-UGCUauaGCAC- -5'
24238 5' -54.6 NC_005263.2 + 33416 0.69 0.504121
Target:  5'- -cGAUCgccuugaGCGCCGCGCGCGcguagcgGUCGg- -3'
miRNA:   3'- caCUAG-------CGCGGCGCGUGCua-----UAGCac -5'
24238 5' -54.6 NC_005263.2 + 25730 0.69 0.505176
Target:  5'- cUGGcgcugCGCGCCGUGCACGAccUGUCc-- -3'
miRNA:   3'- cACUa----GCGCGGCGCGUGCU--AUAGcac -5'
24238 5' -54.6 NC_005263.2 + 12176 0.69 0.526469
Target:  5'- -cGAUCGCgGCCGUGuCGCGAUGaagCGg- -3'
miRNA:   3'- caCUAGCG-CGGCGC-GUGCUAUa--GCac -5'
24238 5' -54.6 NC_005263.2 + 17493 0.69 0.54809
Target:  5'- cUGAUCGCGCgCG-GCGCGucgAUCGa- -3'
miRNA:   3'- cACUAGCGCG-GCgCGUGCua-UAGCac -5'
24238 5' -54.6 NC_005263.2 + 37356 0.69 0.54809
Target:  5'- -cGGUCGCgGCCGUGCuCGAUGcgcUCGa- -3'
miRNA:   3'- caCUAGCG-CGGCGCGuGCUAU---AGCac -5'
24238 5' -54.6 NC_005263.2 + 45315 0.69 0.54809
Target:  5'- aUGA-CGCGCUGCGCAauCGcuucacgGUCGUGa -3'
miRNA:   3'- cACUaGCGCGGCGCGU--GCua-----UAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.