miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24238 5' -54.6 NC_005263.2 + 11592 0.67 0.68109
Target:  5'- -aGGUCGCGCC-C-CGCGAUGaaGUGg -3'
miRNA:   3'- caCUAGCGCGGcGcGUGCUAUagCAC- -5'
24238 5' -54.6 NC_005263.2 + 30285 0.68 0.592082
Target:  5'- --aAUCGgGCCGCGCGCGGcAUCc-- -3'
miRNA:   3'- cacUAGCgCGGCGCGUGCUaUAGcac -5'
24238 5' -54.6 NC_005263.2 + 10746 0.66 0.724787
Target:  5'- --aGUCGCGCaCGCGCAUGcgGcCGUc -3'
miRNA:   3'- cacUAGCGCG-GCGCGUGCuaUaGCAc -5'
24238 5' -54.6 NC_005263.2 + 47880 0.67 0.670017
Target:  5'- -cGAUCGCcuauagugGCUGCGUGCaGGUGUCGa- -3'
miRNA:   3'- caCUAGCG--------CGGCGCGUG-CUAUAGCac -5'
24238 5' -54.6 NC_005263.2 + 11800 0.67 0.68109
Target:  5'- -cGAaCGCGCCggucgucacuucGCGCGCGAacgUGUCGa- -3'
miRNA:   3'- caCUaGCGCGG------------CGCGUGCU---AUAGCac -5'
24238 5' -54.6 NC_005263.2 + 41349 0.67 0.68109
Target:  5'- -cGAgcUCGC-CCgGCGCGCGAUGgaCGUGa -3'
miRNA:   3'- caCU--AGCGcGG-CGCGUGCUAUa-GCAC- -5'
24238 5' -54.6 NC_005263.2 + 9754 0.67 0.670017
Target:  5'- -cGAUCGCGgUGCGCACcGAcuUCGc- -3'
miRNA:   3'- caCUAGCGCgGCGCGUG-CUauAGCac -5'
24238 5' -54.6 NC_005263.2 + 11516 0.66 0.713975
Target:  5'- cUGGUCGCGCgCGaugaaggcgGCGCGGUucGUCGUc -3'
miRNA:   3'- cACUAGCGCG-GCg--------CGUGCUA--UAGCAc -5'
24238 5' -54.6 NC_005263.2 + 24619 0.66 0.703081
Target:  5'- aGUGGUaCGCGauGUccaucggauGCGCGAUGUCGUa -3'
miRNA:   3'- -CACUA-GCGCggCG---------CGUGCUAUAGCAc -5'
24238 5' -54.6 NC_005263.2 + 17401 0.66 0.703081
Target:  5'- -cGGccgCGCGCCugGCGgGCGGUGUCGc- -3'
miRNA:   3'- caCUa--GCGCGG--CGCgUGCUAUAGCac -5'
24238 5' -54.6 NC_005263.2 + 34821 0.66 0.692115
Target:  5'- cUGGcUGCGCaCGCGCcaguCGGUGUCGg- -3'
miRNA:   3'- cACUaGCGCG-GCGCGu---GCUAUAGCac -5'
24238 5' -54.6 NC_005263.2 + 27135 0.67 0.68109
Target:  5'- -gGcgCGCaGCCGCGUcgGCGAUGUCc-- -3'
miRNA:   3'- caCuaGCG-CGGCGCG--UGCUAUAGcac -5'
24238 5' -54.6 NC_005263.2 + 41501 0.68 0.614321
Target:  5'- -cGAgCGCGCCGCcgaaCGCGAUcgCGUc -3'
miRNA:   3'- caCUaGCGCGGCGc---GUGCUAuaGCAc -5'
24238 5' -54.6 NC_005263.2 + 3349 0.68 0.614321
Target:  5'- -----gGCGCCGCGCGCGG--UCGa- -3'
miRNA:   3'- cacuagCGCGGCGCGUGCUauAGCac -5'
24238 5' -54.6 NC_005263.2 + 18759 0.68 0.592082
Target:  5'- -cGAUCGUaggcggcgcgguGCuCGCGCugGuUAUCGUGc -3'
miRNA:   3'- caCUAGCG------------CG-GCGCGugCuAUAGCAC- -5'
24238 5' -54.6 NC_005263.2 + 9784 0.68 0.592082
Target:  5'- -cGGUCGCG-CGCGCAuCGAUcucAUCGa- -3'
miRNA:   3'- caCUAGCGCgGCGCGU-GCUA---UAGCac -5'
24238 5' -54.6 NC_005263.2 + 43822 0.68 0.569982
Target:  5'- -gGA-CGaGCCGgGCACGAUGuUCGUGu -3'
miRNA:   3'- caCUaGCgCGGCgCGUGCUAU-AGCAC- -5'
24238 5' -54.6 NC_005263.2 + 38579 0.71 0.424212
Target:  5'- -cGGUCGCuGCCGCGCACGGc------ -3'
miRNA:   3'- caCUAGCG-CGGCGCGUGCUauagcac -5'
24238 5' -54.6 NC_005263.2 + 17493 0.69 0.54809
Target:  5'- cUGAUCGCGCgCG-GCGCGucgAUCGa- -3'
miRNA:   3'- cACUAGCGCG-GCgCGUGCua-UAGCac -5'
24238 5' -54.6 NC_005263.2 + 10933 0.74 0.280846
Target:  5'- cGUGAUCGCGUCGUGCGgGGUGagcgcuUCGa- -3'
miRNA:   3'- -CACUAGCGCGGCGCGUgCUAU------AGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.