miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 44779 0.69 0.366852
Target:  5'- cGCCGGcggcgcgcagacguUGAAcacCGCGCGGCCgCGCCcagGCAa -3'
miRNA:   3'- -UGGCU--------------ACUU---GCGCGUUGG-GCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 45419 0.69 0.364256
Target:  5'- uGCCGAgcGGcCGCGCGAUCagcuaccacaacgcaCGCCUGCAc -3'
miRNA:   3'- -UGGCUa-CUuGCGCGUUGG---------------GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 2709 0.69 0.360814
Target:  5'- gGCaGGUGcAUGCGCAGCgCGCgUGCAu -3'
miRNA:   3'- -UGgCUACuUGCGCGUUGgGCGgACGU- -5'
24244 3' -57.4 NC_005263.2 + 45850 0.69 0.360814
Target:  5'- gGCCGA---GCGCGCGGCgCGCUacgGCAa -3'
miRNA:   3'- -UGGCUacuUGCGCGUUGgGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 27520 0.69 0.352309
Target:  5'- aGCCGGU---CGCGguGCCCGUCgGCAc -3'
miRNA:   3'- -UGGCUAcuuGCGCguUGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 42232 0.69 0.352309
Target:  5'- aACUGcaugGGAUGCGCAucgACCgCGCUUGCAg -3'
miRNA:   3'- -UGGCua--CUUGCGCGU---UGG-GCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 47191 0.7 0.343947
Target:  5'- uUCGAUGcgucGACGaGUAACCCGCCgGCGg -3'
miRNA:   3'- uGGCUAC----UUGCgCGUUGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 14178 0.7 0.327656
Target:  5'- gGCCGGUG--UGCGCGAgCUGCgUGCGc -3'
miRNA:   3'- -UGGCUACuuGCGCGUUgGGCGgACGU- -5'
24244 3' -57.4 NC_005263.2 + 8865 0.7 0.319726
Target:  5'- gGCCGAcgGGAUaCGCGGCCCGUgCUGCc -3'
miRNA:   3'- -UGGCUa-CUUGcGCGUUGGGCG-GACGu -5'
24244 3' -57.4 NC_005263.2 + 15557 0.7 0.319726
Target:  5'- -gCGAguaAGCGCGUGGCCgGCCUGCc -3'
miRNA:   3'- ugGCUac-UUGCGCGUUGGgCGGACGu -5'
24244 3' -57.4 NC_005263.2 + 38328 0.7 0.311942
Target:  5'- gAUCGAUGcGCGCGCGACCgUGCaCgcgGCGa -3'
miRNA:   3'- -UGGCUACuUGCGCGUUGG-GCG-Ga--CGU- -5'
24244 3' -57.4 NC_005263.2 + 23378 0.7 0.311942
Target:  5'- cCCGGUGAuCGuCGUAuugCCGCCUGCGc -3'
miRNA:   3'- uGGCUACUuGC-GCGUug-GGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 399 0.7 0.311942
Target:  5'- uGCCGAUGAucaGCGUgccgaGCAGCuuGCC-GCAc -3'
miRNA:   3'- -UGGCUACU---UGCG-----CGUUGggCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 24162 0.7 0.311942
Target:  5'- cACCGucacgcucacGAACGCGCAAgCCGCCaaaGCGa -3'
miRNA:   3'- -UGGCua--------CUUGCGCGUUgGGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 20723 0.71 0.296807
Target:  5'- aGCCGGUcAGCGCGCcGgCCGCCgccGCGc -3'
miRNA:   3'- -UGGCUAcUUGCGCGuUgGGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 39394 0.71 0.296807
Target:  5'- uACgCGAUGGACGCGgcCGACCUGUCgccGCAc -3'
miRNA:   3'- -UG-GCUACUUGCGC--GUUGGGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 7203 0.71 0.296807
Target:  5'- uACCGAgu--CGCGCGACCauCGCCgGCGa -3'
miRNA:   3'- -UGGCUacuuGCGCGUUGG--GCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 7038 0.71 0.296807
Target:  5'- cGCCGAcgGAugGCGCAuCgCGCCaaugGCAg -3'
miRNA:   3'- -UGGCUa-CUugCGCGUuGgGCGGa---CGU- -5'
24244 3' -57.4 NC_005263.2 + 21785 0.71 0.289456
Target:  5'- aACCGAccuucACGC-CGACCgGCCUGCAg -3'
miRNA:   3'- -UGGCUacu--UGCGcGUUGGgCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 30712 0.71 0.268263
Target:  5'- cCCGccaGGCGCGCGGCCgCGCCgGCAg -3'
miRNA:   3'- uGGCuacUUGCGCGUUGG-GCGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.