miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 15557 0.7 0.319726
Target:  5'- -gCGAguaAGCGCGUGGCCgGCCUGCc -3'
miRNA:   3'- ugGCUac-UUGCGCGUUGGgCGGACGu -5'
24244 3' -57.4 NC_005263.2 + 17165 0.73 0.206604
Target:  5'- gGCCGAgaagccGAAUGCGCAGCUCGCg-GCGu -3'
miRNA:   3'- -UGGCUa-----CUUGCGCGUUGGGCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 17819 0.75 0.161974
Target:  5'- gGCCGAgGAugccGCGCGCGGCCCGaUUGCGc -3'
miRNA:   3'- -UGGCUaCU----UGCGCGUUGGGCgGACGU- -5'
24244 3' -57.4 NC_005263.2 + 18122 0.74 0.180628
Target:  5'- gGCCGAguucuacgcgcUGAuCGCGCuGCCCGCCgcUGCGc -3'
miRNA:   3'- -UGGCU-----------ACUuGCGCGuUGGGCGG--ACGU- -5'
24244 3' -57.4 NC_005263.2 + 18335 0.68 0.43383
Target:  5'- cGCCGAcggcacgcugcUGAACcCGCAgaACCCGgcgcaCCUGCAg -3'
miRNA:   3'- -UGGCU-----------ACUUGcGCGU--UGGGC-----GGACGU- -5'
24244 3' -57.4 NC_005263.2 + 19038 0.74 0.174365
Target:  5'- gGCCGAUGcgcgccgccccgagGACGCGCcGCgCgGCCUGCGc -3'
miRNA:   3'- -UGGCUAC--------------UUGCGCGuUG-GgCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 20723 0.71 0.296807
Target:  5'- aGCCGGUcAGCGCGCcGgCCGCCgccGCGc -3'
miRNA:   3'- -UGGCUAcUUGCGCGuUgGGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 21785 0.71 0.289456
Target:  5'- aACCGAccuucACGC-CGACCgGCCUGCAg -3'
miRNA:   3'- -UGGCUacu--UGCGcGUUGGgCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 22029 0.73 0.206604
Target:  5'- gGCCGcaucuacuucAUG-ACGCGCAACCCGgCUGUu -3'
miRNA:   3'- -UGGC----------UACuUGCGCGUUGGGCgGACGu -5'
24244 3' -57.4 NC_005263.2 + 22757 0.73 0.201162
Target:  5'- cGCCGAgGAACGCgaugGCGACCUGCCcgagGCu -3'
miRNA:   3'- -UGGCUaCUUGCG----CGUUGGGCGGa---CGu -5'
24244 3' -57.4 NC_005263.2 + 23152 0.66 0.568272
Target:  5'- uGCCGAUcugcGAAcCGCGCA--CCGCCgUGCc -3'
miRNA:   3'- -UGGCUA----CUU-GCGCGUugGGCGG-ACGu -5'
24244 3' -57.4 NC_005263.2 + 23303 0.66 0.557428
Target:  5'- gGCCGAau-ACGCGCcGCCgaCGCCcgGCGa -3'
miRNA:   3'- -UGGCUacuUGCGCGuUGG--GCGGa-CGU- -5'
24244 3' -57.4 NC_005263.2 + 23378 0.7 0.311942
Target:  5'- cCCGGUGAuCGuCGUAuugCCGCCUGCGc -3'
miRNA:   3'- uGGCUACUuGC-GCGUug-GGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 23495 0.68 0.39624
Target:  5'- cUCGGUGAAuugaccUGCGCcGCcaCCGCCUGCGc -3'
miRNA:   3'- uGGCUACUU------GCGCGuUG--GGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 23548 0.69 0.378249
Target:  5'- uGCCGAccGugGCGCAGCcgccgCCGCCcGCGc -3'
miRNA:   3'- -UGGCUacUugCGCGUUG-----GGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 23800 0.66 0.518939
Target:  5'- cGCCGAUGcGACGCGCGcgaGCcaaucgcucggguuuCCGCCUuccaccauGCAa -3'
miRNA:   3'- -UGGCUAC-UUGCGCGU---UG---------------GGCGGA--------CGU- -5'
24244 3' -57.4 NC_005263.2 + 23893 0.66 0.535928
Target:  5'- -gCG-UGAGCGCGCucgugagcgcGCCCGCgaGCGu -3'
miRNA:   3'- ugGCuACUUGCGCGu---------UGGGCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 24135 0.72 0.238844
Target:  5'- cGCCGAUuugcgucgcgguugcGAACGCGCugucgaacgggaauuGCCCGCCgaGCAu -3'
miRNA:   3'- -UGGCUA---------------CUUGCGCGu--------------UGGGCGGa-CGU- -5'
24244 3' -57.4 NC_005263.2 + 24162 0.7 0.311942
Target:  5'- cACCGucacgcucacGAACGCGCAAgCCGCCaaaGCGa -3'
miRNA:   3'- -UGGCua--------CUUGCGCGUUgGGCGGa--CGU- -5'
24244 3' -57.4 NC_005263.2 + 26136 0.68 0.424238
Target:  5'- gGCaGAucUGcGCGCGCAGCauGCCUGCGu -3'
miRNA:   3'- -UGgCU--ACuUGCGCGUUGggCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.