miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 399 0.7 0.311942
Target:  5'- uGCCGAUGAucaGCGUgccgaGCAGCuuGCC-GCAc -3'
miRNA:   3'- -UGGCUACU---UGCG-----CGUUGggCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 689 0.72 0.254841
Target:  5'- uGCuCGGUGAGCGCGauCGugCCGCCgcccGCGa -3'
miRNA:   3'- -UG-GCUACUUGCGC--GUugGGCGGa---CGU- -5'
24244 3' -57.4 NC_005263.2 + 790 0.67 0.463341
Target:  5'- uUCGAccuUGAGCGUGCcGgCCGCCgGCGc -3'
miRNA:   3'- uGGCU---ACUUGCGCGuUgGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 2709 0.69 0.360814
Target:  5'- gGCaGGUGcAUGCGCAGCgCGCgUGCAu -3'
miRNA:   3'- -UGgCUACuUGCGCGUUGgGCGgACGU- -5'
24244 3' -57.4 NC_005263.2 + 2844 0.68 0.40544
Target:  5'- cACCGuucGAAUGCGggcCGGCCCGCCcGCc -3'
miRNA:   3'- -UGGCua-CUUGCGC---GUUGGGCGGaCGu -5'
24244 3' -57.4 NC_005263.2 + 3200 0.76 0.128351
Target:  5'- gGCCGGUGAgccggcccgGCGCGCcGCCCGCCccgaugacgccggGCAg -3'
miRNA:   3'- -UGGCUACU---------UGCGCGuUGGGCGGa------------CGU- -5'
24244 3' -57.4 NC_005263.2 + 5836 1.08 0.000612
Target:  5'- uACCGAUGAACGCGCAACCCGCCUGCAu -3'
miRNA:   3'- -UGGCUACUUGCGCGUUGGGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 6462 0.66 0.557428
Target:  5'- aGCaCGAgcGAGCGCGUGGgCCGCagUGCAa -3'
miRNA:   3'- -UG-GCUa-CUUGCGCGUUgGGCGg-ACGU- -5'
24244 3' -57.4 NC_005263.2 + 7038 0.71 0.296807
Target:  5'- cGCCGAcgGAugGCGCAuCgCGCCaaugGCAg -3'
miRNA:   3'- -UGGCUa-CUugCGCGUuGgGCGGa---CGU- -5'
24244 3' -57.4 NC_005263.2 + 7203 0.71 0.296807
Target:  5'- uACCGAgu--CGCGCGACCauCGCCgGCGa -3'
miRNA:   3'- -UGGCUacuuGCGCGUUGG--GCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 8803 0.66 0.568272
Target:  5'- -gCGAUcGcGCGCGCAugcGCCUGCCgGCc -3'
miRNA:   3'- ugGCUA-CuUGCGCGU---UGGGCGGaCGu -5'
24244 3' -57.4 NC_005263.2 + 8865 0.7 0.319726
Target:  5'- gGCCGAcgGGAUaCGCGGCCCGUgCUGCc -3'
miRNA:   3'- -UGGCUa-CUUGcGCGUUGGGCG-GACGu -5'
24244 3' -57.4 NC_005263.2 + 9175 0.67 0.492837
Target:  5'- aGCCGAUGcGCgacgucgagcucgGCGCGgcGCCCGgCUUGCu -3'
miRNA:   3'- -UGGCUACuUG-------------CGCGU--UGGGC-GGACGu -5'
24244 3' -57.4 NC_005263.2 + 9442 0.66 0.540206
Target:  5'- gGCCGAUcaagacgggcaccacGGGCagcgGCGC-GCCCGgCUGCAg -3'
miRNA:   3'- -UGGCUA---------------CUUG----CGCGuUGGGCgGACGU- -5'
24244 3' -57.4 NC_005263.2 + 9835 0.67 0.453385
Target:  5'- cGuuGAcGAACgGCGCGGCgCGCUUGCu -3'
miRNA:   3'- -UggCUaCUUG-CGCGUUGgGCGGACGu -5'
24244 3' -57.4 NC_005263.2 + 10011 0.67 0.483588
Target:  5'- cGCCaGGUGcGgGCGCAGCaCCGCC-GCc -3'
miRNA:   3'- -UGG-CUACuUgCGCGUUG-GGCGGaCGu -5'
24244 3' -57.4 NC_005263.2 + 10165 0.69 0.378249
Target:  5'- gGCCGGUu-GCGCaccggcugccgGCGGCgCGCCUGCGc -3'
miRNA:   3'- -UGGCUAcuUGCG-----------CGUUGgGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 12555 0.66 0.568272
Target:  5'- gGCCGgcG-GCGcCGUAgcGCCCGCCcGCGc -3'
miRNA:   3'- -UGGCuaCuUGC-GCGU--UGGGCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 14178 0.7 0.327656
Target:  5'- gGCCGGUG--UGCGCGAgCUGCgUGCGc -3'
miRNA:   3'- -UGGCUACuuGCGCGUUgGGCGgACGU- -5'
24244 3' -57.4 NC_005263.2 + 15214 0.66 0.557428
Target:  5'- cGCCGAcGccGACGCcacgaaacucGCcGCCCGCCgGCAc -3'
miRNA:   3'- -UGGCUaC--UUGCG----------CGuUGGGCGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.