miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24244 3' -57.4 NC_005263.2 + 5836 1.08 0.000612
Target:  5'- uACCGAUGAACGCGCAACCCGCCUGCAu -3'
miRNA:   3'- -UGGCUACUUGCGCGUUGGGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 39848 0.78 0.10071
Target:  5'- gGCCGuccGAACGCGCAuACCCGgCUGCc -3'
miRNA:   3'- -UGGCua-CUUGCGCGU-UGGGCgGACGu -5'
24244 3' -57.4 NC_005263.2 + 39708 0.77 0.116015
Target:  5'- cGCCGAggcGGCGCGCuuccuggucGGCCUGCCUGCGc -3'
miRNA:   3'- -UGGCUac-UUGCGCG---------UUGGGCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 3200 0.76 0.128351
Target:  5'- gGCCGGUGAgccggcccgGCGCGCcGCCCGCCccgaugacgccggGCAg -3'
miRNA:   3'- -UGGCUACU---------UGCGCGuUGGGCGGa------------CGU- -5'
24244 3' -57.4 NC_005263.2 + 17819 0.75 0.161974
Target:  5'- gGCCGAgGAugccGCGCGCGGCCCGaUUGCGc -3'
miRNA:   3'- -UGGCUaCU----UGCGCGUUGGGCgGACGU- -5'
24244 3' -57.4 NC_005263.2 + 27369 0.74 0.171074
Target:  5'- uGCCGAcGAguagGCGCGCuucguugccgacGGCCCGgCCUGCAg -3'
miRNA:   3'- -UGGCUaCU----UGCGCG------------UUGGGC-GGACGU- -5'
24244 3' -57.4 NC_005263.2 + 19038 0.74 0.174365
Target:  5'- gGCCGAUGcgcgccgccccgagGACGCGCcGCgCgGCCUGCGc -3'
miRNA:   3'- -UGGCUAC--------------UUGCGCGuUG-GgCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 18122 0.74 0.180628
Target:  5'- gGCCGAguucuacgcgcUGAuCGCGCuGCCCGCCgcUGCGc -3'
miRNA:   3'- -UGGCU-----------ACUuGCGCGuUGGGCGG--ACGU- -5'
24244 3' -57.4 NC_005263.2 + 45479 0.74 0.190653
Target:  5'- aGCgCGAUGAAcCGCGCggUCgGCCUGUc -3'
miRNA:   3'- -UG-GCUACUU-GCGCGuuGGgCGGACGu -5'
24244 3' -57.4 NC_005263.2 + 38132 0.73 0.201162
Target:  5'- aACCGGacgGcgUGCGCAGCCCGCaggGCAg -3'
miRNA:   3'- -UGGCUa--CuuGCGCGUUGGGCGga-CGU- -5'
24244 3' -57.4 NC_005263.2 + 22757 0.73 0.201162
Target:  5'- cGCCGAgGAACGCgaugGCGACCUGCCcgagGCu -3'
miRNA:   3'- -UGGCUaCUUGCG----CGUUGGGCGGa---CGu -5'
24244 3' -57.4 NC_005263.2 + 17165 0.73 0.206604
Target:  5'- gGCCGAgaagccGAAUGCGCAGCUCGCg-GCGu -3'
miRNA:   3'- -UGGCUa-----CUUGCGCGUUGGGCGgaCGU- -5'
24244 3' -57.4 NC_005263.2 + 22029 0.73 0.206604
Target:  5'- gGCCGcaucuacuucAUG-ACGCGCAACCCGgCUGUu -3'
miRNA:   3'- -UGGC----------UACuUGCGCGUUGGGCgGACGu -5'
24244 3' -57.4 NC_005263.2 + 24135 0.72 0.238844
Target:  5'- cGCCGAUuugcgucgcgguugcGAACGCGCugucgaacgggaauuGCCCGCCgaGCAu -3'
miRNA:   3'- -UGGCUA---------------CUUGCGCGu--------------UGGGCGGa-CGU- -5'
24244 3' -57.4 NC_005263.2 + 37683 0.72 0.241346
Target:  5'- cGCCGGaucaggcguucguUGAACGCGCGccggACCCGCUcGCc -3'
miRNA:   3'- -UGGCU-------------ACUUGCGCGU----UGGGCGGaCGu -5'
24244 3' -57.4 NC_005263.2 + 689 0.72 0.254841
Target:  5'- uGCuCGGUGAGCGCGauCGugCCGCCgcccGCGa -3'
miRNA:   3'- -UG-GCUACUUGCGC--GUugGGCGGa---CGU- -5'
24244 3' -57.4 NC_005263.2 + 29819 0.71 0.260811
Target:  5'- -gCGAUGcAGCGCGCAcgacgagcgcaucGCCCggaacGCCUGCGa -3'
miRNA:   3'- ugGCUAC-UUGCGCGU-------------UGGG-----CGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 30712 0.71 0.268263
Target:  5'- cCCGccaGGCGCGCGGCCgCGCCgGCAg -3'
miRNA:   3'- uGGCuacUUGCGCGUUGG-GCGGaCGU- -5'
24244 3' -57.4 NC_005263.2 + 21785 0.71 0.289456
Target:  5'- aACCGAccuucACGC-CGACCgGCCUGCAg -3'
miRNA:   3'- -UGGCUacu--UGCGcGUUGGgCGGACGU- -5'
24244 3' -57.4 NC_005263.2 + 7203 0.71 0.296807
Target:  5'- uACCGAgu--CGCGCGACCauCGCCgGCGa -3'
miRNA:   3'- -UGGCUacuuGCGCGUUGG--GCGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.