miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24258 3' -58.1 NC_005263.2 + 2262 0.67 0.442214
Target:  5'- aGCgc-GCCgcgcGCUCGGCCaagGUUGCGGUc -3'
miRNA:   3'- -CGaaaCGGa---CGAGCUGG---CGACGCCGc -5'
24258 3' -58.1 NC_005263.2 + 3304 0.7 0.296679
Target:  5'- --cUUGCCUGggcgCGGCCGC-GCGGUGu -3'
miRNA:   3'- cgaAACGGACga--GCUGGCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 3754 0.69 0.335303
Target:  5'- ----cGCCUGCUCG-CgCGCgggcaGCGGCa -3'
miRNA:   3'- cgaaaCGGACGAGCuG-GCGa----CGCCGc -5'
24258 3' -58.1 NC_005263.2 + 4169 0.69 0.360185
Target:  5'- aGCgc-GCCgcGCUCGuGCUGCaGCGGCGu -3'
miRNA:   3'- -CGaaaCGGa-CGAGC-UGGCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 5483 0.69 0.335303
Target:  5'- uGCUUcGUgCUGCUCGACaggggGC-GCGGCGa -3'
miRNA:   3'- -CGAAaCG-GACGAGCUGg----CGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 6653 0.66 0.523245
Target:  5'- ----cGCCUGCUCGAUCauaUGCGcGUGc -3'
miRNA:   3'- cgaaaCGGACGAGCUGGcg-ACGC-CGC- -5'
24258 3' -58.1 NC_005263.2 + 7118 0.79 0.076371
Target:  5'- cGUUUcGCCUGCcgugCGACCGaCUGUGGCGu -3'
miRNA:   3'- -CGAAaCGGACGa---GCUGGC-GACGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 7485 0.71 0.261601
Target:  5'- cGCUUgGCCucgaagUGCcgCGcACCGCUGaCGGCGa -3'
miRNA:   3'- -CGAAaCGG------ACGa-GC-UGGCGAC-GCCGC- -5'
24258 3' -58.1 NC_005263.2 + 7673 0.67 0.457874
Target:  5'- cCUUUGCCcgucuucaaccggGUucgagUCGGCCGC-GCGGCGu -3'
miRNA:   3'- cGAAACGGa------------CG-----AGCUGGCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 8820 0.75 0.130522
Target:  5'- ----cGCCUGC-CGGCCGCU-CGGCGu -3'
miRNA:   3'- cgaaaCGGACGaGCUGGCGAcGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 9699 1.1 0.000363
Target:  5'- cGCUUUGCCUGCUCGACCGCUGCGGCGc -3'
miRNA:   3'- -CGAAACGGACGAGCUGGCGACGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 12207 0.7 0.30262
Target:  5'- ----cGCCUGUgucUCGACCGCaccgacaucaacGCGGCGa -3'
miRNA:   3'- cgaaaCGGACG---AGCUGGCGa-----------CGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 12565 0.66 0.480893
Target:  5'- uGCgUUUGCgaacgugCUGC-CGAUCGCcgGCGGCa -3'
miRNA:   3'- -CG-AAACG-------GACGaGCUGGCGa-CGCCGc -5'
24258 3' -58.1 NC_005263.2 + 12798 0.67 0.432581
Target:  5'- ----cGCCUGCUUGuACCggGCUuCGGCGa -3'
miRNA:   3'- cgaaaCGGACGAGC-UGG--CGAcGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 14653 0.66 0.480893
Target:  5'- cGCUgaccgagUUGCCaGCgcucguggcCGACCGCUacgcgcgcGCGGCGc -3'
miRNA:   3'- -CGA-------AACGGaCGa--------GCUGGCGA--------CGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 15475 0.69 0.343456
Target:  5'- -aUUUGCCgUGCUgCGGCgGC-GCGGUGa -3'
miRNA:   3'- cgAAACGG-ACGA-GCUGgCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 17204 0.68 0.412758
Target:  5'- ----cGCCgcGCUCGACucgugcaCGCUGCaGGCGa -3'
miRNA:   3'- cgaaaCGGa-CGAGCUG-------GCGACG-CCGC- -5'
24258 3' -58.1 NC_005263.2 + 17386 0.7 0.296679
Target:  5'- aGCUgucUGCCgGCgCGGCCGCgcgccugGCgGGCGg -3'
miRNA:   3'- -CGAa--ACGGaCGaGCUGGCGa------CG-CCGC- -5'
24258 3' -58.1 NC_005263.2 + 18837 0.68 0.4109
Target:  5'- aGCUcaUUGCCgcGUUCGACCGCgUGaacaacgcgugccuCGGCGc -3'
miRNA:   3'- -CGA--AACGGa-CGAGCUGGCG-AC--------------GCCGC- -5'
24258 3' -58.1 NC_005263.2 + 18907 0.73 0.181197
Target:  5'- cGCgccgGCCUGCgucgagcgUGACCGC-GCGGCa -3'
miRNA:   3'- -CGaaa-CGGACGa-------GCUGGCGaCGCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.