miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24258 3' -58.1 NC_005263.2 + 9699 1.1 0.000363
Target:  5'- cGCUUUGCCUGCUCGACCGCUGCGGCGc -3'
miRNA:   3'- -CGAAACGGACGAGCUGGCGACGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 35834 0.67 0.423072
Target:  5'- cGCUUgUGcCCUGCaggUCGGCaaaaaacaacgGCUGCGGCa -3'
miRNA:   3'- -CGAA-AC-GGACG---AGCUGg----------CGACGCCGc -5'
24258 3' -58.1 NC_005263.2 + 36163 0.68 0.377475
Target:  5'- gGCgacgGCCUGCgCGACCGgUGCGa-- -3'
miRNA:   3'- -CGaaa-CGGACGaGCUGGCgACGCcgc -5'
24258 3' -58.1 NC_005263.2 + 4169 0.69 0.360185
Target:  5'- aGCgc-GCCgcGCUCGuGCUGCaGCGGCGu -3'
miRNA:   3'- -CGaaaCGGa-CGAGC-UGGCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 37924 0.71 0.268337
Target:  5'- gGCUUcgGCCUGCUCGcgauUCGCgcucuCGGCGa -3'
miRNA:   3'- -CGAAa-CGGACGAGCu---GGCGac---GCCGC- -5'
24258 3' -58.1 NC_005263.2 + 7485 0.71 0.261601
Target:  5'- cGCUUgGCCucgaagUGCcgCGcACCGCUGaCGGCGa -3'
miRNA:   3'- -CGAAaCGG------ACGa-GC-UGGCGAC-GCCGC- -5'
24258 3' -58.1 NC_005263.2 + 21408 0.66 0.50239
Target:  5'- gGCcg-GCCUGCUCGGCgcauuacgugCGCaucaauggGCGGCc -3'
miRNA:   3'- -CGaaaCGGACGAGCUG----------GCGa-------CGCCGc -5'
24258 3' -58.1 NC_005263.2 + 12798 0.67 0.432581
Target:  5'- ----cGCCUGCUUGuACCggGCUuCGGCGa -3'
miRNA:   3'- cgaaaCGGACGAGC-UGG--CGAcGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 17204 0.68 0.412758
Target:  5'- ----cGCCgcGCUCGACucgugcaCGCUGCaGGCGa -3'
miRNA:   3'- cgaaaCGGa-CGAGCUG-------GCGACG-CCGC- -5'
24258 3' -58.1 NC_005263.2 + 15475 0.69 0.343456
Target:  5'- -aUUUGCCgUGCUgCGGCgGC-GCGGUGa -3'
miRNA:   3'- cgAAACGG-ACGA-GCUGgCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 44749 0.75 0.134189
Target:  5'- cGCacUGUCUggucGCUCGACCGCgcGCGGCGc -3'
miRNA:   3'- -CGaaACGGA----CGAGCUGGCGa-CGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 26291 0.67 0.442214
Target:  5'- cGCgagaaugGCUUGCUCGccgGCCaGCUGCaGGCc -3'
miRNA:   3'- -CGaaa----CGGACGAGC---UGG-CGACG-CCGc -5'
24258 3' -58.1 NC_005263.2 + 22500 0.73 0.181197
Target:  5'- gGCg--GCCggcggcgGUUCGGCgGCUGCGGCc -3'
miRNA:   3'- -CGaaaCGGa------CGAGCUGgCGACGCCGc -5'
24258 3' -58.1 NC_005263.2 + 47694 0.68 0.377475
Target:  5'- uGCUgUGCggcaagCUGCUCGGCaCGCUGaucauCGGCa -3'
miRNA:   3'- -CGAaACG------GACGAGCUG-GCGAC-----GCCGc -5'
24258 3' -58.1 NC_005263.2 + 29226 0.66 0.492099
Target:  5'- -aUUUGCCg--UCGGCgCGCaGCGGCGc -3'
miRNA:   3'- cgAAACGGacgAGCUG-GCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 44595 0.71 0.247906
Target:  5'- cGCUgaagaagaUUGCCgcgcgcgacaacuUGCcCGACuCGCUGCGGCa -3'
miRNA:   3'- -CGA--------AACGG-------------ACGaGCUG-GCGACGCCGc -5'
24258 3' -58.1 NC_005263.2 + 31611 0.67 0.423072
Target:  5'- ---aUGCCggucGCgaCGGCCGC-GCGGCGc -3'
miRNA:   3'- cgaaACGGa---CGa-GCUGGCGaCGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 17386 0.7 0.296679
Target:  5'- aGCUgucUGCCgGCgCGGCCGCgcgccugGCgGGCGg -3'
miRNA:   3'- -CGAa--ACGGaCGaGCUGGCGa------CG-CCGC- -5'
24258 3' -58.1 NC_005263.2 + 12207 0.7 0.30262
Target:  5'- ----cGCCUGUgucUCGACCGCaccgacaucaacGCGGCGa -3'
miRNA:   3'- cgaaaCGGACG---AGCUGGCGa-----------CGCCGC- -5'
24258 3' -58.1 NC_005263.2 + 3754 0.69 0.335303
Target:  5'- ----cGCCUGCUCG-CgCGCgggcaGCGGCa -3'
miRNA:   3'- cgaaaCGGACGAGCuG-GCGa----CGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.