miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 5' -57.5 NC_005263.2 + 11172 1.07 0.000671
Target:  5'- cCGGCUGCGACACGCGGUUAAGCCGCUu -3'
miRNA:   3'- -GCCGACGCUGUGCGCCAAUUCGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 26186 0.78 0.101738
Target:  5'- aCGGuCUGCGGcCGCGCGGc--GGCCGCg -3'
miRNA:   3'- -GCC-GACGCU-GUGCGCCaauUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 45175 0.75 0.158849
Target:  5'- gGGCUacaGCGGCACGUugacGGUUAcgacGGCCGCg -3'
miRNA:   3'- gCCGA---CGCUGUGCG----CCAAU----UCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 11393 0.73 0.197197
Target:  5'- gCGGcCUGCGcGCACGUGGUUcGGgCGCg -3'
miRNA:   3'- -GCC-GACGC-UGUGCGCCAAuUCgGCGa -5'
24262 5' -57.5 NC_005263.2 + 15480 0.73 0.213548
Target:  5'- cCGuGCUGCGGCgGCGCGG-UGAGCaucaGCa -3'
miRNA:   3'- -GC-CGACGCUG-UGCGCCaAUUCGg---CGa -5'
24262 5' -57.5 NC_005263.2 + 9419 0.73 0.225085
Target:  5'- gCGGCUGCGGCGCu--GUU-AGCCGCg -3'
miRNA:   3'- -GCCGACGCUGUGcgcCAAuUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 36662 0.72 0.229247
Target:  5'- uCGGCUugcauuggGCGACcuggcagcauucgaGCGCGGgcaagGAGCCGCg -3'
miRNA:   3'- -GCCGA--------CGCUG--------------UGCGCCaa---UUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 34009 0.72 0.23105
Target:  5'- uGGCUGCGucgcgGCGCGCGauccaGAGCUGCUg -3'
miRNA:   3'- gCCGACGC-----UGUGCGCcaa--UUCGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 8849 0.72 0.23105
Target:  5'- aGGUagGCGGCGCGCGGggcgcGAGCCccGCUa -3'
miRNA:   3'- gCCGa-CGCUGUGCGCCaa---UUCGG--CGA- -5'
24262 5' -57.5 NC_005263.2 + 36965 0.72 0.23105
Target:  5'- aGGCUGCGG-GCGCGGUUGuuaccAGuuGCc -3'
miRNA:   3'- gCCGACGCUgUGCGCCAAU-----UCggCGa -5'
24262 5' -57.5 NC_005263.2 + 3169 0.72 0.237148
Target:  5'- gGGCUuCGugGCGCGGaauaacuGCCGCUg -3'
miRNA:   3'- gCCGAcGCugUGCGCCaauu---CGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 22495 0.72 0.256251
Target:  5'- cCGGCgGCGGCcgGCgGCGGUUcGGCgGCUg -3'
miRNA:   3'- -GCCGaCGCUG--UG-CGCCAAuUCGgCGA- -5'
24262 5' -57.5 NC_005263.2 + 44775 0.71 0.269674
Target:  5'- gCGGCgccgGCGGCGCGCagacGUUGaacaccgcgcGGCCGCg -3'
miRNA:   3'- -GCCGa---CGCUGUGCGc---CAAU----------UCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 31386 0.71 0.269674
Target:  5'- gGGCUGCu-CGCGCGG-UAGGUgCGCUg -3'
miRNA:   3'- gCCGACGcuGUGCGCCaAUUCG-GCGA- -5'
24262 5' -57.5 NC_005263.2 + 9376 0.71 0.276596
Target:  5'- gCGGCUGCGGgaauuucaGCGCGGcgGccAGCUGCUc -3'
miRNA:   3'- -GCCGACGCUg-------UGCGCCaaU--UCGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 27403 0.71 0.290864
Target:  5'- cCGGCUGCGuCACGaccggcgcaGGUUucgcGCCGCc -3'
miRNA:   3'- -GCCGACGCuGUGCg--------CCAAuu--CGGCGa -5'
24262 5' -57.5 NC_005263.2 + 26026 0.7 0.305701
Target:  5'- uGGCuUGuCGAgCugGCGGUUGAGCuCGUc -3'
miRNA:   3'- gCCG-AC-GCU-GugCGCCAAUUCG-GCGa -5'
24262 5' -57.5 NC_005263.2 + 24542 0.7 0.305701
Target:  5'- aCGGCgGCGGCGCggGCGGcggcGGCUGCg -3'
miRNA:   3'- -GCCGaCGCUGUG--CGCCaau-UCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 1855 0.7 0.313335
Target:  5'- aGGCcgGCGACGUGCGGUUcuGGCgCGCc -3'
miRNA:   3'- gCCGa-CGCUGUGCGCCAAu-UCG-GCGa -5'
24262 5' -57.5 NC_005263.2 + 7952 0.7 0.316429
Target:  5'- aGGUUGCcguguccuuaccuucGACACGCGGcgccaGAGCUGCa -3'
miRNA:   3'- gCCGACG---------------CUGUGCGCCaa---UUCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.