miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24262 5' -57.5 NC_005263.2 + 1371 0.66 0.558192
Target:  5'- cCGGCgGCGGCcuugaacgaGCGCaug-AAGCCGCg -3'
miRNA:   3'- -GCCGaCGCUG---------UGCGccaaUUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 1855 0.7 0.313335
Target:  5'- aGGCcgGCGACGUGCGGUUcuGGCgCGCc -3'
miRNA:   3'- gCCGa-CGCUGUGCGCCAAu-UCG-GCGa -5'
24262 5' -57.5 NC_005263.2 + 2445 0.66 0.558192
Target:  5'- aCGGC-GCGGCaaacacuuGCGCGccgaacgAAGCCGCg -3'
miRNA:   3'- -GCCGaCGCUG--------UGCGCcaa----UUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 2663 0.67 0.474468
Target:  5'- uCGGCgGCGACAC-CGGc--AGCCuGCa -3'
miRNA:   3'- -GCCGaCGCUGUGcGCCaauUCGG-CGa -5'
24262 5' -57.5 NC_005263.2 + 3169 0.72 0.237148
Target:  5'- gGGCUuCGugGCGCGGaauaacuGCCGCUg -3'
miRNA:   3'- gCCGAcGCugUGCGCCaauu---CGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 3308 0.68 0.415994
Target:  5'- gCGcGCgGCGGCGCGCGGUUGAauuaaacuaucGCuuCGCg -3'
miRNA:   3'- -GC-CGaCGCUGUGCGCCAAUU-----------CG--GCGa -5'
24262 5' -57.5 NC_005263.2 + 3311 0.66 0.529342
Target:  5'- gGGC-GCGGcCGCGCGGUguucaacgucugcgcGCCGCc -3'
miRNA:   3'- gCCGaCGCU-GUGCGCCAauu------------CGGCGa -5'
24262 5' -57.5 NC_005263.2 + 7144 0.69 0.396592
Target:  5'- aCGGCUaugucaaGCGACccuauuGCGCGGccaucGCCGCUg -3'
miRNA:   3'- -GCCGA-------CGCUG------UGCGCCaauu-CGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 7952 0.7 0.316429
Target:  5'- aGGUUGCcguguccuuaccuucGACACGCGGcgccaGAGCUGCa -3'
miRNA:   3'- gCCGACG---------------CUGUGCGCCaa---UUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 8197 0.69 0.388457
Target:  5'- uCGGUUGCGGCACGUacGGc---GCCGUc -3'
miRNA:   3'- -GCCGACGCUGUGCG--CCaauuCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 8849 0.72 0.23105
Target:  5'- aGGUagGCGGCGCGCGGggcgcGAGCCccGCUa -3'
miRNA:   3'- gCCGa-CGCUGUGCGCCaa---UUCGG--CGA- -5'
24262 5' -57.5 NC_005263.2 + 9376 0.71 0.276596
Target:  5'- gCGGCUGCGGgaauuucaGCGCGGcgGccAGCUGCUc -3'
miRNA:   3'- -GCCGACGCUg-------UGCGCCaaU--UCGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 9419 0.73 0.225085
Target:  5'- gCGGCUGCGGCGCu--GUU-AGCCGCg -3'
miRNA:   3'- -GCCGACGCUGUGcgcCAAuUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 9464 0.66 0.568994
Target:  5'- gGGCaGCGGCGCGCcc---GGCUGCa -3'
miRNA:   3'- gCCGaCGCUGUGCGccaauUCGGCGa -5'
24262 5' -57.5 NC_005263.2 + 9540 0.66 0.547449
Target:  5'- gCGGCaGCGACcgACGCGGcgcucGCgGCUu -3'
miRNA:   3'- -GCCGaCGCUG--UGCGCCaauu-CGgCGA- -5'
24262 5' -57.5 NC_005263.2 + 10252 0.66 0.568994
Target:  5'- uGGauucgGCG-CACGCGGUUcgcgaAAcGCCGCg -3'
miRNA:   3'- gCCga---CGCuGUGCGCCAA-----UU-CGGCGa -5'
24262 5' -57.5 NC_005263.2 + 10880 0.67 0.484613
Target:  5'- uCGGCacCGGCGCGCGucgUGAGCgGCg -3'
miRNA:   3'- -GCCGacGCUGUGCGCca-AUUCGgCGa -5'
24262 5' -57.5 NC_005263.2 + 11172 1.07 0.000671
Target:  5'- cCGGCUGCGACACGCGGUUAAGCCGCUu -3'
miRNA:   3'- -GCCGACGCUGUGCGCCAAUUCGGCGA- -5'
24262 5' -57.5 NC_005263.2 + 11393 0.73 0.197197
Target:  5'- gCGGcCUGCGcGCACGUGGUUcGGgCGCg -3'
miRNA:   3'- -GCC-GACGC-UGUGCGCCAAuUCgGCGa -5'
24262 5' -57.5 NC_005263.2 + 13756 0.68 0.443718
Target:  5'- cCGGUuuacacgGCGACAgGCGcGUcgcuuaaUGGGCCGCa -3'
miRNA:   3'- -GCCGa------CGCUGUgCGC-CA-------AUUCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.