miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 3' -54.4 NC_005263.2 + 17336 0.68 0.666695
Target:  5'- gCCGGUGgcuUCGACGUUCGgCaucgcggUCGAcgauccgaaccGCGUg -3'
miRNA:   3'- -GGCCAU---AGCUGCAAGCgG-------AGCU-----------CGCG- -5'
24263 3' -54.4 NC_005263.2 + 15495 0.68 0.666695
Target:  5'- gCGGUgagcAUCagcaccgGACGUUUGCCUuCGAGCa- -3'
miRNA:   3'- gGCCA----UAG-------CUGCAAGCGGA-GCUCGcg -5'
24263 3' -54.4 NC_005263.2 + 41146 0.68 0.656886
Target:  5'- uCCGGaaacCGGCGUUCGCgCggcgUGGGCGg -3'
miRNA:   3'- -GGCCaua-GCUGCAAGCG-Ga---GCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 37684 0.68 0.656886
Target:  5'- gCCGG-AUCaGGCGUUCGUUgaaCGcGCGCc -3'
miRNA:   3'- -GGCCaUAG-CUGCAAGCGGa--GCuCGCG- -5'
24263 3' -54.4 NC_005263.2 + 46162 0.68 0.645966
Target:  5'- gCGGUugcCGGCG-UCGCCggugCcGGCGCg -3'
miRNA:   3'- gGCCAua-GCUGCaAGCGGa---GcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9715 0.68 0.645966
Target:  5'- aCaGUgcGUCGAUcaGUUCgGCCUCGGGCGg -3'
miRNA:   3'- gGcCA--UAGCUG--CAAG-CGGAGCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 28966 0.68 0.645966
Target:  5'- aUCGGUGUCG-CGgaa--UUCGGGCGCa -3'
miRNA:   3'- -GGCCAUAGCuGCaagcgGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 29154 0.68 0.645966
Target:  5'- gCCGGcugCGcuCGUaaccggCGCgCUCGAGCGCu -3'
miRNA:   3'- -GGCCauaGCu-GCAa-----GCG-GAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 32679 0.69 0.619726
Target:  5'- gCGGcgaUGUCGACGUgCGUCagcaggucggucaCGAGCGCa -3'
miRNA:   3'- gGCC---AUAGCUGCAaGCGGa------------GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 3901 0.69 0.613171
Target:  5'- aUGGUGUCGugGUagCGCC--GGGCGg -3'
miRNA:   3'- gGCCAUAGCugCAa-GCGGagCUCGCg -5'
24263 3' -54.4 NC_005263.2 + 10157 0.69 0.602259
Target:  5'- gCGGgcagcUUGGCG-UCGCCgaGAGCGCg -3'
miRNA:   3'- gGCCau---AGCUGCaAGCGGagCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 19867 0.69 0.602259
Target:  5'- -aGGUcaCGGCGagCGCggCGAGCGCg -3'
miRNA:   3'- ggCCAuaGCUGCaaGCGgaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 21821 0.69 0.602259
Target:  5'- aCCGGgcucaucgAUUGGCGcaaagCGCCaucUUGGGCGCa -3'
miRNA:   3'- -GGCCa-------UAGCUGCaa---GCGG---AGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 47920 0.69 0.602259
Target:  5'- gCCGGg--CGcacgggcaGCGggcUCGCCcCGGGCGCg -3'
miRNA:   3'- -GGCCauaGC--------UGCa--AGCGGaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 36865 0.69 0.58052
Target:  5'- cCCGGcgGUCGAgaaUUCGaCC-CGGGCGCg -3'
miRNA:   3'- -GGCCa-UAGCUgc-AAGC-GGaGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 22798 0.7 0.56971
Target:  5'- aUGGUGUCGaaGCGgUCGUUcaugCGGGCGCu -3'
miRNA:   3'- gGCCAUAGC--UGCaAGCGGa---GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 45452 0.7 0.56971
Target:  5'- gCCGGUGUCGcCGccgauaCGCCggCaAGCGCg -3'
miRNA:   3'- -GGCCAUAGCuGCaa----GCGGa-GcUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 21205 0.7 0.548247
Target:  5'- gCGGgcgaGugGgugCGUUUCGAGCGCg -3'
miRNA:   3'- gGCCauagCugCaa-GCGGAGCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 9992 0.7 0.53761
Target:  5'- uCCGGU-UCGcCGUcuugcgCGCCaggugCGGGCGCa -3'
miRNA:   3'- -GGCCAuAGCuGCAa-----GCGGa----GCUCGCG- -5'
24263 3' -54.4 NC_005263.2 + 18910 0.7 0.53761
Target:  5'- gCCGGccugcGUCGAgCGUgaccgCGCggcacgagcgCUCGAGCGCg -3'
miRNA:   3'- -GGCCa----UAGCU-GCAa----GCG----------GAGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.