miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 5' -53.7 NC_005263.2 + 15279 0.67 0.655522
Target:  5'- -gGCGCU-GAa-GGGCGCcGAGUACGAg -3'
miRNA:   3'- aaCGCGAgCUagCUCGCG-UUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 16830 0.72 0.406851
Target:  5'- -cGCGCUCGAcgcguucaaccagUCGAuGCGCGAG-ACGu -3'
miRNA:   3'- aaCGCGAGCU-------------AGCU-CGCGUUCaUGCu -5'
24263 5' -53.7 NC_005263.2 + 18286 0.66 0.711657
Target:  5'- aUGCGCUCG-UCGuGCGCGc-UGCa- -3'
miRNA:   3'- aACGCGAGCuAGCuCGCGUucAUGcu -5'
24263 5' -53.7 NC_005263.2 + 18943 0.77 0.203595
Target:  5'- -aGCGCUCGAgcgcgccgguUCGAGCGCAgccGGcACGAc -3'
miRNA:   3'- aaCGCGAGCU----------AGCUCGCGU---UCaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 22562 0.66 0.723781
Target:  5'- -cGCGCUCGcgaucaacucgaagcUCGAcUGCGGGUGCGGc -3'
miRNA:   3'- aaCGCGAGCu--------------AGCUcGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 23434 0.69 0.531799
Target:  5'- aUGCGCUCGAuguucggcgaUCGGG-GUGAGUGCu- -3'
miRNA:   3'- aACGCGAGCU----------AGCUCgCGUUCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 23900 0.67 0.644178
Target:  5'- -cGCGCUCG--UGAGCGCGcccGCGAg -3'
miRNA:   3'- aaCGCGAGCuaGCUCGCGUucaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 26075 0.67 0.701662
Target:  5'- gUUGCGCgucaugaaguagaugCGGcCGAGCGCGuccuGGUACGc -3'
miRNA:   3'- -AACGCGa--------------GCUaGCUCGCGU----UCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 26457 0.67 0.655522
Target:  5'- -aGCGCUUGGU---GCGCGAGUGCc- -3'
miRNA:   3'- aaCGCGAGCUAgcuCGCGUUCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 27106 0.67 0.666842
Target:  5'- -gGCGCuUCGA-CGGGCGCG---GCGAa -3'
miRNA:   3'- aaCGCG-AGCUaGCUCGCGUucaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 27258 0.66 0.733614
Target:  5'- -cGaCGCUCGcGUCGAauuggcccgacuGCGCGAGgcCGAg -3'
miRNA:   3'- aaC-GCGAGC-UAGCU------------CGCGUUCauGCU- -5'
24263 5' -53.7 NC_005263.2 + 29159 0.71 0.425275
Target:  5'- cUGCGCUCGuaaccggcgcgcUCGAGCGCucGUGCc- -3'
miRNA:   3'- aACGCGAGCu-----------AGCUCGCGuuCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 30420 0.66 0.722684
Target:  5'- cUGCaGCaggucggugCGGUCGAGCGCGAGcaGCGu -3'
miRNA:   3'- aACG-CGa--------GCUAGCUCGCGUUCa-UGCu -5'
24263 5' -53.7 NC_005263.2 + 32103 0.66 0.755138
Target:  5'- -gGCGUcggugCGAUCGAGCGCuu---CGAg -3'
miRNA:   3'- aaCGCGa----GCUAGCUCGCGuucauGCU- -5'
24263 5' -53.7 NC_005263.2 + 34061 0.66 0.722684
Target:  5'- aUGCGCUCGA-CGcGGCGCccguGgcCGAa -3'
miRNA:   3'- aACGCGAGCUaGC-UCGCGuu--CauGCU- -5'
24263 5' -53.7 NC_005263.2 + 35971 0.66 0.733614
Target:  5'- -gGCGCUCGAccgccUgGAGCGCGcGUaAUGGc -3'
miRNA:   3'- aaCGCGAGCU-----AgCUCGCGUuCA-UGCU- -5'
24263 5' -53.7 NC_005263.2 + 36129 1.05 0.00202
Target:  5'- cUUGCGCUCGAUCGAGCGCAAGUACGGg -3'
miRNA:   3'- -AACGCGAGCUAGCUCGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 36557 0.67 0.678128
Target:  5'- ---aGCUCG-UCGAGCGCGgcaaGGUgACGAc -3'
miRNA:   3'- aacgCGAGCuAGCUCGCGU----UCA-UGCU- -5'
24263 5' -53.7 NC_005263.2 + 37374 0.67 0.699432
Target:  5'- aUGCGCUCGAgucugcgUCGcccuggcuGCGCGAcGUGCa- -3'
miRNA:   3'- aACGCGAGCU-------AGCu-------CGCGUU-CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 38402 0.66 0.711657
Target:  5'- -aGCGCgccgcagCGGUCGAgcaggcaaaGCGCGAcGUGCGu -3'
miRNA:   3'- aaCGCGa------GCUAGCU---------CGCGUU-CAUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.