miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 5' -53.7 NC_005263.2 + 687 0.7 0.499292
Target:  5'- -cGUGCUCGGU-GAGCGCGAucGUGCc- -3'
miRNA:   3'- aaCGCGAGCUAgCUCGCGUU--CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 2166 0.66 0.711657
Target:  5'- -gGCGCU-GAUCcGGCGCGAG-ACGc -3'
miRNA:   3'- aaCGCGAgCUAGcUCGCGUUCaUGCu -5'
24263 5' -53.7 NC_005263.2 + 2502 0.72 0.407808
Target:  5'- cUGC-CUCGAgaUCGGGCGCGAcGUACa- -3'
miRNA:   3'- aACGcGAGCU--AGCUCGCGUU-CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 3196 0.67 0.666842
Target:  5'- cUGCGCgUCGG-CGAGCGCGgccAGgauCGGg -3'
miRNA:   3'- aACGCG-AGCUaGCUCGCGU---UCau-GCU- -5'
24263 5' -53.7 NC_005263.2 + 3354 0.71 0.437164
Target:  5'- -cGCGCgCGGUCGAGCGaccagacAGUGCGc -3'
miRNA:   3'- aaCGCGaGCUAGCUCGCgu-----UCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 5857 0.75 0.266541
Target:  5'- gUGCGgUCGAagUCGAGcCGCAggcGGUACGGg -3'
miRNA:   3'- aACGCgAGCU--AGCUC-GCGU---UCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 6578 0.67 0.644178
Target:  5'- -cGCGUUUGcgCaGGCGCAAGUAguCGAc -3'
miRNA:   3'- aaCGCGAGCuaGcUCGCGUUCAU--GCU- -5'
24263 5' -53.7 NC_005263.2 + 6703 0.69 0.531799
Target:  5'- -aGUGCUugCGGUCGGGCGCAugcuCGAg -3'
miRNA:   3'- aaCGCGA--GCUAGCUCGCGUucauGCU- -5'
24263 5' -53.7 NC_005263.2 + 7322 0.68 0.632823
Target:  5'- aUGCGCUCGAUCagcaucGCGUucAGGaGCGAc -3'
miRNA:   3'- aACGCGAGCUAGcu----CGCG--UUCaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 7910 0.71 0.427243
Target:  5'- -aGCGCUCGAUCGAauGCGCAcgcaucuucucGGUGa-- -3'
miRNA:   3'- aaCGCGAGCUAGCU--CGCGU-----------UCAUgcu -5'
24263 5' -53.7 NC_005263.2 + 9214 0.66 0.711657
Target:  5'- -gGCGCUCGuaCG-GCGCGcGGUACGu -3'
miRNA:   3'- aaCGCGAGCuaGCuCGCGU-UCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 9651 0.67 0.644178
Target:  5'- cUUGCGCU--GUCGAGCGCAAuGU-CGc -3'
miRNA:   3'- -AACGCGAgcUAGCUCGCGUU-CAuGCu -5'
24263 5' -53.7 NC_005263.2 + 9728 0.66 0.751941
Target:  5'- cUUGCGCUCGuucgccacagcaguGUCGAuCGC-GGUGCGc -3'
miRNA:   3'- -AACGCGAGC--------------UAGCUcGCGuUCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 10203 0.66 0.755138
Target:  5'- -aGCGCUCGccggccUCGGGCuCGAGUccagacGCGAu -3'
miRNA:   3'- aaCGCGAGCu-----AGCUCGcGUUCA------UGCU- -5'
24263 5' -53.7 NC_005263.2 + 10325 0.67 0.689367
Target:  5'- -cGaCGCUCG-UCGAucucGCGCAGGcGCGGc -3'
miRNA:   3'- aaC-GCGAGCuAGCU----CGCGUUCaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 11980 1.06 0.001679
Target:  5'- cUUGCGCUCGAUCGAGCGCAAGUACGAc -3'
miRNA:   3'- -AACGCGAGCUAGCUCGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 12061 0.66 0.744437
Target:  5'- cUGuCGgUCGAccgagaCGGGCGCGAGUACc- -3'
miRNA:   3'- aAC-GCgAGCUa-----GCUCGCGUUCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 12137 0.66 0.722684
Target:  5'- -cGCGCUccaggCGGUCGAGCGCcu-UGCa- -3'
miRNA:   3'- aaCGCGA-----GCUAGCUCGCGuucAUGcu -5'
24263 5' -53.7 NC_005263.2 + 14051 0.66 0.733614
Target:  5'- -gGCGC-CGcGUCGAGCGCAuugAGcGCGc -3'
miRNA:   3'- aaCGCGaGC-UAGCUCGCGU---UCaUGCu -5'
24263 5' -53.7 NC_005263.2 + 14879 0.76 0.220996
Target:  5'- -cGCGCagcuugUCGGcCGAGUGCAGGUGCGGc -3'
miRNA:   3'- aaCGCG------AGCUaGCUCGCGUUCAUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.