Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24263 | 5' | -53.7 | NC_005263.2 | + | 11980 | 1.06 | 0.001679 |
Target: 5'- cUUGCGCUCGAUCGAGCGCAAGUACGAc -3' miRNA: 3'- -AACGCGAGCUAGCUCGCGUUCAUGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 12137 | 0.66 | 0.722684 |
Target: 5'- -cGCGCUccaggCGGUCGAGCGCcu-UGCa- -3' miRNA: 3'- aaCGCGA-----GCUAGCUCGCGuucAUGcu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 46610 | 0.66 | 0.733614 |
Target: 5'- gUGCGCUCGAaagaaacCGAGUGCc---GCGAg -3' miRNA: 3'- aACGCGAGCUa------GCUCGCGuucaUGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 9728 | 0.66 | 0.751941 |
Target: 5'- cUUGCGCUCGuucgccacagcaguGUCGAuCGC-GGUGCGc -3' miRNA: 3'- -AACGCGAGC--------------UAGCUcGCGuUCAUGCu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 7910 | 0.71 | 0.427243 |
Target: 5'- -aGCGCUCGAUCGAauGCGCAcgcaucuucucGGUGa-- -3' miRNA: 3'- aaCGCGAGCUAGCU--CGCGU-----------UCAUgcu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 687 | 0.7 | 0.499292 |
Target: 5'- -cGUGCUCGGU-GAGCGCGAucGUGCc- -3' miRNA: 3'- aaCGCGAGCUAgCUCGCGUU--CAUGcu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 42902 | 0.69 | 0.565039 |
Target: 5'- -cGCGCUCGccUGGaCGCGAGUGCGc -3' miRNA: 3'- aaCGCGAGCuaGCUcGCGUUCAUGCu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 43451 | 0.69 | 0.565039 |
Target: 5'- aUGCGCagauugUCGAUaccgucagCGGGCGCGuuugggAGUACGAa -3' miRNA: 3'- aACGCG------AGCUA--------GCUCGCGU------UCAUGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 23900 | 0.67 | 0.644178 |
Target: 5'- -cGCGCUCG--UGAGCGCGcccGCGAg -3' miRNA: 3'- aaCGCGAGCuaGCUCGCGUucaUGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 18286 | 0.66 | 0.711657 |
Target: 5'- aUGCGCUCG-UCGuGCGCGc-UGCa- -3' miRNA: 3'- aACGCGAGCuAGCuCGCGUucAUGcu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 27106 | 0.67 | 0.666842 |
Target: 5'- -gGCGCuUCGA-CGGGCGCG---GCGAa -3' miRNA: 3'- aaCGCG-AGCUaGCUCGCGUucaUGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 9651 | 0.67 | 0.644178 |
Target: 5'- cUUGCGCU--GUCGAGCGCAAuGU-CGc -3' miRNA: 3'- -AACGCGAgcUAGCUCGCGUU-CAuGCu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 14879 | 0.76 | 0.220996 |
Target: 5'- -cGCGCagcuugUCGGcCGAGUGCAGGUGCGGc -3' miRNA: 3'- aaCGCG------AGCUaGCUCGCGUUCAUGCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 37374 | 0.67 | 0.699432 |
Target: 5'- aUGCGCUCGAgucugcgUCGcccuggcuGCGCGAcGUGCa- -3' miRNA: 3'- aACGCGAGCU-------AGCu-------CGCGUU-CAUGcu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 2502 | 0.72 | 0.407808 |
Target: 5'- cUGC-CUCGAgaUCGGGCGCGAcGUACa- -3' miRNA: 3'- aACGcGAGCU--AGCUCGCGUU-CAUGcu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 6578 | 0.67 | 0.644178 |
Target: 5'- -cGCGUUUGcgCaGGCGCAAGUAguCGAc -3' miRNA: 3'- aaCGCGAGCuaGcUCGCGUUCAU--GCU- -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 26075 | 0.67 | 0.701662 |
Target: 5'- gUUGCGCgucaugaaguagaugCGGcCGAGCGCGuccuGGUACGc -3' miRNA: 3'- -AACGCGa--------------GCUaGCUCGCGU----UCAUGCu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 14051 | 0.66 | 0.733614 |
Target: 5'- -gGCGC-CGcGUCGAGCGCAuugAGcGCGc -3' miRNA: 3'- aaCGCGaGC-UAGCUCGCGU---UCaUGCu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 29159 | 0.71 | 0.425275 |
Target: 5'- cUGCGCUCGuaaccggcgcgcUCGAGCGCucGUGCc- -3' miRNA: 3'- aACGCGAGCu-----------AGCUCGCGuuCAUGcu -5' |
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24263 | 5' | -53.7 | NC_005263.2 | + | 39082 | 0.69 | 0.55389 |
Target: 5'- -cGCGCUUcGUUGAGCcggacgGCGAGUACGc -3' miRNA: 3'- aaCGCGAGcUAGCUCG------CGUUCAUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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