miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 5' -53.7 NC_005263.2 + 11980 1.06 0.001679
Target:  5'- cUUGCGCUCGAUCGAGCGCAAGUACGAc -3'
miRNA:   3'- -AACGCGAGCUAGCUCGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 36129 1.05 0.00202
Target:  5'- cUUGCGCUCGAUCGAGCGCAAGUACGGg -3'
miRNA:   3'- -AACGCGAGCUAGCUCGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 18943 0.77 0.203595
Target:  5'- -aGCGCUCGAgcgcgccgguUCGAGCGCAgccGGcACGAc -3'
miRNA:   3'- aaCGCGAGCU----------AGCUCGCGU---UCaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 14879 0.76 0.220996
Target:  5'- -cGCGCagcuugUCGGcCGAGUGCAGGUGCGGc -3'
miRNA:   3'- aaCGCG------AGCUaGCUCGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 5857 0.75 0.266541
Target:  5'- gUGCGgUCGAagUCGAGcCGCAggcGGUACGGg -3'
miRNA:   3'- aACGCgAGCU--AGCUC-GCGU---UCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 40201 0.74 0.303526
Target:  5'- gUGCGCauUCGAUCGAGCGCuauucgucGUACu- -3'
miRNA:   3'- aACGCG--AGCUAGCUCGCGuu------CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 16830 0.72 0.406851
Target:  5'- -cGCGCUCGAcgcguucaaccagUCGAuGCGCGAG-ACGu -3'
miRNA:   3'- aaCGCGAGCU-------------AGCU-CGCGUUCaUGCu -5'
24263 5' -53.7 NC_005263.2 + 2502 0.72 0.407808
Target:  5'- cUGC-CUCGAgaUCGGGCGCGAcGUACa- -3'
miRNA:   3'- aACGcGAGCU--AGCUCGCGUU-CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 29159 0.71 0.425275
Target:  5'- cUGCGCUCGuaaccggcgcgcUCGAGCGCucGUGCc- -3'
miRNA:   3'- aACGCGAGCu-----------AGCUCGCGuuCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 7910 0.71 0.427243
Target:  5'- -aGCGCUCGAUCGAauGCGCAcgcaucuucucGGUGa-- -3'
miRNA:   3'- aaCGCGAGCUAGCU--CGCGU-----------UCAUgcu -5'
24263 5' -53.7 NC_005263.2 + 3354 0.71 0.437164
Target:  5'- -cGCGCgCGGUCGAGCGaccagacAGUGCGc -3'
miRNA:   3'- aaCGCGaGCUAGCUCGCgu-----UCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 687 0.7 0.499292
Target:  5'- -cGUGCUCGGU-GAGCGCGAucGUGCc- -3'
miRNA:   3'- aaCGCGAGCUAgCUCGCGUU--CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 6703 0.69 0.531799
Target:  5'- -aGUGCUugCGGUCGGGCGCAugcuCGAg -3'
miRNA:   3'- aaCGCGA--GCUAGCUCGCGUucauGCU- -5'
24263 5' -53.7 NC_005263.2 + 23434 0.69 0.531799
Target:  5'- aUGCGCUCGAuguucggcgaUCGGG-GUGAGUGCu- -3'
miRNA:   3'- aACGCGAGCU----------AGCUCgCGUUCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 39082 0.69 0.55389
Target:  5'- -cGCGCUUcGUUGAGCcggacgGCGAGUACGc -3'
miRNA:   3'- aaCGCGAGcUAGCUCG------CGUUCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 43451 0.69 0.565039
Target:  5'- aUGCGCagauugUCGAUaccgucagCGGGCGCGuuugggAGUACGAa -3'
miRNA:   3'- aACGCG------AGCUA--------GCUCGCGU------UCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 42902 0.69 0.565039
Target:  5'- -cGCGCUCGccUGGaCGCGAGUGCGc -3'
miRNA:   3'- aaCGCGAGCuaGCUcGCGUUCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 38461 0.68 0.5875
Target:  5'- aUUGCGCUCGA-C-AGCGCAAGccaGAu -3'
miRNA:   3'- -AACGCGAGCUaGcUCGCGUUCaugCU- -5'
24263 5' -53.7 NC_005263.2 + 7322 0.68 0.632823
Target:  5'- aUGCGCUCGAUCagcaucGCGUucAGGaGCGAc -3'
miRNA:   3'- aACGCGAGCUAGcu----CGCG--UUCaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 6578 0.67 0.644178
Target:  5'- -cGCGUUUGcgCaGGCGCAAGUAguCGAc -3'
miRNA:   3'- aaCGCGAGCuaGcUCGCGUUCAU--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.