miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24263 5' -53.7 NC_005263.2 + 9651 0.67 0.644178
Target:  5'- cUUGCGCU--GUCGAGCGCAAuGU-CGc -3'
miRNA:   3'- -AACGCGAgcUAGCUCGCGUU-CAuGCu -5'
24263 5' -53.7 NC_005263.2 + 37374 0.67 0.699432
Target:  5'- aUGCGCUCGAgucugcgUCGcccuggcuGCGCGAcGUGCa- -3'
miRNA:   3'- aACGCGAGCU-------AGCu-------CGCGUU-CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 34061 0.66 0.722684
Target:  5'- aUGCGCUCGA-CGcGGCGCccguGgcCGAa -3'
miRNA:   3'- aACGCGAGCUaGC-UCGCGuu--CauGCU- -5'
24263 5' -53.7 NC_005263.2 + 36129 1.05 0.00202
Target:  5'- cUUGCGCUCGAUCGAGCGCAAGUACGGg -3'
miRNA:   3'- -AACGCGAGCUAGCUCGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 18943 0.77 0.203595
Target:  5'- -aGCGCUCGAgcgcgccgguUCGAGCGCAgccGGcACGAc -3'
miRNA:   3'- aaCGCGAGCU----------AGCUCGCGU---UCaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 5857 0.75 0.266541
Target:  5'- gUGCGgUCGAagUCGAGcCGCAggcGGUACGGg -3'
miRNA:   3'- aACGCgAGCU--AGCUC-GCGU---UCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 22562 0.66 0.723781
Target:  5'- -cGCGCUCGcgaucaacucgaagcUCGAcUGCGGGUGCGGc -3'
miRNA:   3'- aaCGCGAGCu--------------AGCUcGCGUUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 30420 0.66 0.722684
Target:  5'- cUGCaGCaggucggugCGGUCGAGCGCGAGcaGCGu -3'
miRNA:   3'- aACG-CGa--------GCUAGCUCGCGUUCa-UGCu -5'
24263 5' -53.7 NC_005263.2 + 2166 0.66 0.711657
Target:  5'- -gGCGCU-GAUCcGGCGCGAG-ACGc -3'
miRNA:   3'- aaCGCGAgCUAGcUCGCGUUCaUGCu -5'
24263 5' -53.7 NC_005263.2 + 10325 0.67 0.689367
Target:  5'- -cGaCGCUCG-UCGAucucGCGCAGGcGCGGc -3'
miRNA:   3'- aaC-GCGAGCuAGCU----CGCGUUCaUGCU- -5'
24263 5' -53.7 NC_005263.2 + 36557 0.67 0.678128
Target:  5'- ---aGCUCG-UCGAGCGCGgcaaGGUgACGAc -3'
miRNA:   3'- aacgCGAGCuAGCUCGCGU----UCA-UGCU- -5'
24263 5' -53.7 NC_005263.2 + 3196 0.67 0.666842
Target:  5'- cUGCGCgUCGG-CGAGCGCGgccAGgauCGGg -3'
miRNA:   3'- aACGCG-AGCUaGCUCGCGU---UCau-GCU- -5'
24263 5' -53.7 NC_005263.2 + 43379 0.67 0.655522
Target:  5'- -cGUGCUCG--CGGGCGCGAcGUACc- -3'
miRNA:   3'- aaCGCGAGCuaGCUCGCGUU-CAUGcu -5'
24263 5' -53.7 NC_005263.2 + 15279 0.67 0.655522
Target:  5'- -gGCGCU-GAa-GGGCGCcGAGUACGAg -3'
miRNA:   3'- aaCGCGAgCUagCUCGCG-UUCAUGCU- -5'
24263 5' -53.7 NC_005263.2 + 38461 0.68 0.5875
Target:  5'- aUUGCGCUCGA-C-AGCGCAAGccaGAu -3'
miRNA:   3'- -AACGCGAGCUaGcUCGCGUUCaugCU- -5'
24263 5' -53.7 NC_005263.2 + 23434 0.69 0.531799
Target:  5'- aUGCGCUCGAuguucggcgaUCGGG-GUGAGUGCu- -3'
miRNA:   3'- aACGCGAGCU----------AGCUCgCGUUCAUGcu -5'
24263 5' -53.7 NC_005263.2 + 6703 0.69 0.531799
Target:  5'- -aGUGCUugCGGUCGGGCGCAugcuCGAg -3'
miRNA:   3'- aaCGCGA--GCUAGCUCGCGUucauGCU- -5'
24263 5' -53.7 NC_005263.2 + 3354 0.71 0.437164
Target:  5'- -cGCGCgCGGUCGAGCGaccagacAGUGCGc -3'
miRNA:   3'- aaCGCGaGCUAGCUCGCgu-----UCAUGCu -5'
24263 5' -53.7 NC_005263.2 + 16830 0.72 0.406851
Target:  5'- -cGCGCUCGAcgcguucaaccagUCGAuGCGCGAG-ACGu -3'
miRNA:   3'- aaCGCGAGCU-------------AGCU-CGCGUUCaUGCu -5'
24263 5' -53.7 NC_005263.2 + 40201 0.74 0.303526
Target:  5'- gUGCGCauUCGAUCGAGCGCuauucgucGUACu- -3'
miRNA:   3'- aACGCG--AGCUAGCUCGCGuu------CAUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.