miRNA display CGI


Results 41 - 60 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 11943 0.67 0.185461
Target:  5'- uCGCAccggUCGCGCaGGCCGUCGCcaaccucacuauacgGCaGGCgCGc -3'
miRNA:   3'- -GCGU----AGCGCG-CCGGCGGCG---------------CG-CCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 15321 0.67 0.183606
Target:  5'- gCGCGagGCGCgGGCCGacaccgagaaccCCGaCGCGGCg- -3'
miRNA:   3'- -GCGUagCGCG-CCGGC------------GGC-GCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 27260 0.67 0.183606
Target:  5'- aCGC-UCGCGUcgaauuGGcCCGaCUGCGCgaGGCCGa -3'
miRNA:   3'- -GCGuAGCGCG------CC-GGC-GGCGCG--CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26860 0.67 0.183606
Target:  5'- aGCAcUGCGCGGCuacuucguCGCCGgUGaCGGCUGc -3'
miRNA:   3'- gCGUaGCGCGCCG--------GCGGC-GC-GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 17020 0.67 0.183606
Target:  5'- uCGUAUCGCuCGaGCaGCgCGuCGCGGCCa -3'
miRNA:   3'- -GCGUAGCGcGC-CGgCG-GC-GCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 12655 0.67 0.183606
Target:  5'- uCGaUAUCGuCGuCGGCCGgCGCGCcggGGUCGu -3'
miRNA:   3'- -GC-GUAGC-GC-GCCGGCgGCGCG---CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26458 0.67 0.183606
Target:  5'- gCGCuuggUGCGCGaGUgccauaCGCCGCGCGucGCCGc -3'
miRNA:   3'- -GCGua--GCGCGC-CG------GCGGCGCGC--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 37335 0.67 0.180855
Target:  5'- aGCAgaccgCGCGCagcuuugaugccgacGGCCGCaUGCGCGuGCgCGa -3'
miRNA:   3'- gCGUa----GCGCG---------------CCGGCG-GCGCGC-CG-GC- -5'
24284 3' -66.7 NC_005263.2 + 24014 0.67 0.179041
Target:  5'- gGCA---CGUaGCCGCCGC-CGGCCGg -3'
miRNA:   3'- gCGUagcGCGcCGGCGGCGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 7163 0.67 0.179041
Target:  5'- -cUAUUGCGCGGCCaucGCCGCuGCGauacCCGg -3'
miRNA:   3'- gcGUAGCGCGCCGG---CGGCG-CGCc---GGC- -5'
24284 3' -66.7 NC_005263.2 + 46502 0.67 0.179041
Target:  5'- gGCGUCGaaGUGuCCGCCGCGCuGCuCGg -3'
miRNA:   3'- gCGUAGCg-CGCcGGCGGCGCGcCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 23554 0.67 0.179041
Target:  5'- cCGUggCGCaGCcGCCGCCGCcCGcGCCGc -3'
miRNA:   3'- -GCGuaGCG-CGcCGGCGGCGcGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 4656 0.67 0.179041
Target:  5'- gGCGaCGgGCaGGCCGgCGCGCgGGUCu -3'
miRNA:   3'- gCGUaGCgCG-CCGGCgGCGCG-CCGGc -5'
24284 3' -66.7 NC_005263.2 + 47729 0.67 0.17859
Target:  5'- gGCAUCGUugGCGGuuGCCGCcuguucgcgaaagGCaucuGGCUGg -3'
miRNA:   3'- gCGUAGCG--CGCCggCGGCG-------------CG----CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 2272 0.67 0.17859
Target:  5'- gCGCAgCGCGUucGCCGUCGgcaggucgugcgcCGUGGCCGg -3'
miRNA:   3'- -GCGUaGCGCGc-CGGCGGC-------------GCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 2404 0.67 0.174577
Target:  5'- gGCgGUCGCuuGGUCGCCGUacaGCGGCa- -3'
miRNA:   3'- gCG-UAGCGcgCCGGCGGCG---CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 40804 0.67 0.174577
Target:  5'- gCGCAUCGCGCagaccuGGCCGCaggcaCGCGUcauGUCGc -3'
miRNA:   3'- -GCGUAGCGCG------CCGGCG-----GCGCGc--CGGC- -5'
24284 3' -66.7 NC_005263.2 + 26932 0.67 0.174577
Target:  5'- gCGCGUC-CGCGuCCGCCcCGUGGCg- -3'
miRNA:   3'- -GCGUAGcGCGCcGGCGGcGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 9804 0.67 0.174577
Target:  5'- uCGCcgCGUGCGGCauaGCCuucGUGCGGauuCGg -3'
miRNA:   3'- -GCGuaGCGCGCCGg--CGG---CGCGCCg--GC- -5'
24284 3' -66.7 NC_005263.2 + 21836 0.67 0.174136
Target:  5'- uCGCGg-GCGUucaggcugaucaGGUCGCCGCGUucgcgacGGCCGg -3'
miRNA:   3'- -GCGUagCGCG------------CCGGCGGCGCG-------CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.