miRNA display CGI


Results 21 - 40 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 4215 0.71 0.093606
Target:  5'- gCGCGUCGaCG-GGUCGUCGagguaGCGGCCu -3'
miRNA:   3'- -GCGUAGC-GCgCCGGCGGCg----CGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 4656 0.67 0.179041
Target:  5'- gGCGaCGgGCaGGCCGgCGCGCgGGUCu -3'
miRNA:   3'- gCGUaGCgCG-CCGGCgGCGCG-CCGGc -5'
24284 3' -66.7 NC_005263.2 + 5220 0.66 0.223396
Target:  5'- gGCGagCGCGCGGCaCGCCauugaCGCGaucaggcGCCGu -3'
miRNA:   3'- gCGUa-GCGCGCCG-GCGGc----GCGC-------CGGC- -5'
24284 3' -66.7 NC_005263.2 + 5579 0.71 0.088528
Target:  5'- aGCucgAUUGUGCGGCCGUCGgGCauccgcacggcgaGGCCGu -3'
miRNA:   3'- gCG---UAGCGCGCCGGCGGCgCG-------------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 5831 0.72 0.077678
Target:  5'- aCGCAuaccauuugUUGU-CGGCCGUCGUGCGGUCGa -3'
miRNA:   3'- -GCGU---------AGCGcGCCGGCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 6088 0.69 0.121793
Target:  5'- aGCcuUgGCGCGGCCgGCCGCaCuGCCGg -3'
miRNA:   3'- gCGu-AgCGCGCCGG-CGGCGcGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 6554 0.71 0.08416
Target:  5'- uCGCAUCGCcgccaCGGCgCGCCGCGCGuuUGc -3'
miRNA:   3'- -GCGUAGCGc----GCCG-GCGGCGCGCcgGC- -5'
24284 3' -66.7 NC_005263.2 + 6604 0.74 0.056231
Target:  5'- aCGCgAUCGCguucgGCGGCgCGCUcgGCGCGGUCGa -3'
miRNA:   3'- -GCG-UAGCG-----CGCCG-GCGG--CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 6846 0.67 0.193045
Target:  5'- uGCAcUGCGCGGCCaucgagcggauuGCgGCGaCGGCa- -3'
miRNA:   3'- gCGUaGCGCGCCGG------------CGgCGC-GCCGgc -5'
24284 3' -66.7 NC_005263.2 + 6939 0.74 0.050451
Target:  5'- aCGUAUCGaCGaCGGCCgcccacGCCGCGCGaacGCCGg -3'
miRNA:   3'- -GCGUAGC-GC-GCCGG------CGGCGCGC---CGGC- -5'
24284 3' -66.7 NC_005263.2 + 7163 0.67 0.179041
Target:  5'- -cUAUUGCGCGGCCaucGCCGCuGCGauacCCGg -3'
miRNA:   3'- gcGUAGCGCGCCGG---CGGCG-CGCc---GGC- -5'
24284 3' -66.7 NC_005263.2 + 7334 0.68 0.144528
Target:  5'- aGCAUCGCGUucaggagcgacuuGCCGCCGCcggugacgaucGCGGCg- -3'
miRNA:   3'- gCGUAGCGCGc------------CGGCGGCG-----------CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 8040 0.66 0.197922
Target:  5'- gGCGUcCGCGcCGuGgCGCCGCGCGaguuCCGu -3'
miRNA:   3'- gCGUA-GCGC-GC-CgGCGGCGCGCc---GGC- -5'
24284 3' -66.7 NC_005263.2 + 8383 0.69 0.135142
Target:  5'- uCGCcagGUCGaCGCGGC--CCGCGCcGGCCa -3'
miRNA:   3'- -GCG---UAGC-GCGCCGgcGGCGCG-CCGGc -5'
24284 3' -66.7 NC_005263.2 + 8739 0.69 0.118652
Target:  5'- uGCGUCGUagaaGCGcGCCGCCGCcgagcgaauCGGCUGc -3'
miRNA:   3'- gCGUAGCG----CGC-CGGCGGCGc--------GCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 8802 0.69 0.125011
Target:  5'- uGCgAUCGCGCGcGCaugCGCCuGC-CGGCCGc -3'
miRNA:   3'- gCG-UAGCGCGC-CG---GCGG-CGcGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 8848 0.72 0.071676
Target:  5'- aGCAUCGCGCGcaGCUcgGCCGacgggauaCGCGGCCc -3'
miRNA:   3'- gCGUAGCGCGC--CGG--CGGC--------GCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 9365 0.66 0.213202
Target:  5'- gGCGagCGCcgGCGGCUGCgggaauuucagCGCgGCGGCCa -3'
miRNA:   3'- gCGUa-GCG--CGCCGGCG-----------GCG-CGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 9519 0.74 0.047782
Target:  5'- gGCugaAUCGUGCGGCCG-UGCGCGGCa- -3'
miRNA:   3'- gCG---UAGCGCGCCGGCgGCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 9758 0.73 0.062651
Target:  5'- gCGCAuuUCGC-CGGUCGCCGCGUgcacGGUCGc -3'
miRNA:   3'- -GCGU--AGCGcGCCGGCGGCGCG----CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.