miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 33 0.69 0.131684
Target:  5'- uGCGUCacugGCGCGGCagGUCGgGCGcGCCu -3'
miRNA:   3'- gCGUAG----CGCGCCGg-CGGCgCGC-CGGc -5'
24284 3' -66.7 NC_005263.2 + 699 0.7 0.10683
Target:  5'- gCGCgAUCGUGCcGCCGCC-CGCGagcGCCGu -3'
miRNA:   3'- -GCG-UAGCGCGcCGGCGGcGCGC---CGGC- -5'
24284 3' -66.7 NC_005263.2 + 800 0.7 0.109678
Target:  5'- aGCGU-GC-CGGCCGCCgGCGCaGGaCCGa -3'
miRNA:   3'- gCGUAgCGcGCCGGCGG-CGCG-CC-GGC- -5'
24284 3' -66.7 NC_005263.2 + 839 0.67 0.188274
Target:  5'- gCGCAcgUCacuaccgaGCGCGGacagcguacCCGUCGUGCcGGCCGg -3'
miRNA:   3'- -GCGU--AG--------CGCGCC---------GGCGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 891 0.71 0.093606
Target:  5'- uCGUucagCGCgGCGGUCGCCGC-CGGCgGg -3'
miRNA:   3'- -GCGua--GCG-CGCCGGCGGCGcGCCGgC- -5'
24284 3' -66.7 NC_005263.2 + 1633 0.79 0.022124
Target:  5'- aCGCGUCGUcgGCGGCguagcccuggaugCGCUGCGCGGUCGg -3'
miRNA:   3'- -GCGUAGCG--CGCCG-------------GCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 2272 0.67 0.17859
Target:  5'- gCGCAgCGCGUucGCCGUCGgcaggucgugcgcCGUGGCCGg -3'
miRNA:   3'- -GCGUaGCGCGc-CGGCGGC-------------GCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 2342 0.79 0.020424
Target:  5'- aGCAcCGUGCGGCCGuuGCGCaGCUGg -3'
miRNA:   3'- gCGUaGCGCGCCGGCggCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 2404 0.67 0.174577
Target:  5'- gGCgGUCGCuuGGUCGCCGUacaGCGGCa- -3'
miRNA:   3'- gCG-UAGCGcgCCGGCGGCG---CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 2610 0.72 0.079784
Target:  5'- uCGCccaAUUGCGCgacaGGCCGaCCGCGCGGUUc -3'
miRNA:   3'- -GCG---UAGCGCG----CCGGC-GGCGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 2689 0.72 0.079784
Target:  5'- aGCugAUCGCGCGGCCGCUcggcaggugcauGCGCaGCgCGc -3'
miRNA:   3'- gCG--UAGCGCGCCGGCGG------------CGCGcCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 2749 0.72 0.079784
Target:  5'- aGCcgagauCGCGGCCGCCGUGCcGGUCGu -3'
miRNA:   3'- gCGuagc--GCGCCGGCGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 2877 0.7 0.104878
Target:  5'- aCGaCGUCGCaGCggcgaggcugauguuGGCCgagacguGCUGCGCGGCCGu -3'
miRNA:   3'- -GC-GUAGCG-CG---------------CCGG-------CGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 3170 0.66 0.213202
Target:  5'- gGCuucGUgGCGCGgaauaacuGCCGCUgcgcgucggcgaGCGCGGCCa -3'
miRNA:   3'- gCG---UAgCGCGC--------CGGCGG------------CGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 3278 0.69 0.124037
Target:  5'- aGUAUCGCcucGCaGuCCGCCguuuucuugccuggGCGCGGCCGc -3'
miRNA:   3'- gCGUAGCG---CGcC-GGCGG--------------CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 3305 0.71 0.093606
Target:  5'- uGUG-CGCGCGGCgG-CGCGCGGuuGa -3'
miRNA:   3'- gCGUaGCGCGCCGgCgGCGCGCCggC- -5'
24284 3' -66.7 NC_005263.2 + 3333 0.68 0.138684
Target:  5'- -aCGUCuGCGC-GCCGCCggcgccgcGCGCGGUCGa -3'
miRNA:   3'- gcGUAG-CGCGcCGGCGG--------CGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 3462 0.67 0.165946
Target:  5'- aCGCAUCGagGCGcagcucgaucaGCUGCCGCaGCGaGUCGg -3'
miRNA:   3'- -GCGUAGCg-CGC-----------CGGCGGCG-CGC-CGGC- -5'
24284 3' -66.7 NC_005263.2 + 3510 0.73 0.066121
Target:  5'- uGUcgCGCGCGGCaaucuucuucagCGUCuCGCGGCCGg -3'
miRNA:   3'- gCGuaGCGCGCCG------------GCGGcGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 3544 0.67 0.193045
Target:  5'- gGgAUCaGCGCaGuGCCGCgcagCGCGuCGGCCGa -3'
miRNA:   3'- gCgUAG-CGCG-C-CGGCG----GCGC-GCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.