Results 1 - 20 of 208 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24284 | 3' | -66.7 | NC_005263.2 | + | 44014 | 0.65 | 0.227811 |
Target: 5'- uCGCGUcCGCuCGGCaaggguggcgacuuCGCCGCguuccgugGCGGCUGg -3' miRNA: 3'- -GCGUA-GCGcGCCG--------------GCGGCG--------CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 38714 | 0.65 | 0.227811 |
Target: 5'- -uCGUCGagcaGCuGGCCGCCGCGCuGaaauucccgcagccGCCGg -3' miRNA: 3'- gcGUAGCg---CG-CCGGCGGCGCG-C--------------CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 5220 | 0.66 | 0.223396 |
Target: 5'- gGCGagCGCGCGGCaCGCCauugaCGCGaucaggcGCCGu -3' miRNA: 3'- gCGUa-GCGCGCCG-GCGGc----GCGC-------CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 12307 | 0.66 | 0.19743 |
Target: 5'- uCGUAcUUGCcgaGCGGCgccagcacguaauCGCCgGCGUGGCCGg -3' miRNA: 3'- -GCGU-AGCG---CGCCG-------------GCGG-CGCGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 19034 | 0.66 | 0.196938 |
Target: 5'- gCGCcuAUCGCGCcguagcgGGCCGCguCGUGCuauccaaGGCCGc -3' miRNA: 3'- -GCG--UAGCGCG-------CCGGCG--GCGCG-------CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 8040 | 0.66 | 0.197922 |
Target: 5'- gGCGUcCGCGcCGuGgCGCCGCGCGaguuCCGu -3' miRNA: 3'- gCGUA-GCGC-GC-CgGCGGCGCGCc---GGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 46737 | 0.66 | 0.197922 |
Target: 5'- gCGC-UCGUucaaGGCCGCCGC-CGGCa- -3' miRNA: 3'- -GCGuAGCGcg--CCGGCGGCGcGCCGgc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 38648 | 0.66 | 0.197922 |
Target: 5'- cCGCGUCGCGCaucgacGCCaaccucGCCaagaucaagguGCGCGGCUa -3' miRNA: 3'- -GCGUAGCGCGc-----CGG------CGG-----------CGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 14947 | 0.66 | 0.202907 |
Target: 5'- -cCGUCGCGaugcaaGG-CGCCGCGCcauGGCUGg -3' miRNA: 3'- gcGUAGCGCg-----CCgGCGGCGCG---CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 14244 | 0.66 | 0.208 |
Target: 5'- cCGUggCGUGCgGGCUgGCuUGCgGCGGCCGg -3' miRNA: 3'- -GCGuaGCGCG-CCGG-CG-GCG-CGCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 3170 | 0.66 | 0.213202 |
Target: 5'- gGCuucGUgGCGCGgaauaacuGCCGCUgcgcgucggcgaGCGCGGCCa -3' miRNA: 3'- gCG---UAgCGCGC--------CGGCGG------------CGCGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 9365 | 0.66 | 0.213202 |
Target: 5'- gGCGagCGCcgGCGGCUGCgggaauuucagCGCgGCGGCCa -3' miRNA: 3'- gCGUa-GCG--CGCCGGCG-----------GCG-CGCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 39700 | 0.66 | 0.223944 |
Target: 5'- gGCGagCGCGagcuggaaaUGGCCGgCGCG-GGCCGc -3' miRNA: 3'- gCGUa-GCGC---------GCCGGCgGCGCgCCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 23920 | 0.66 | 0.213202 |
Target: 5'- gCGCAUCGCuugGUGGCUGauGCuCGGCgGg -3' miRNA: 3'- -GCGUAGCG---CGCCGGCggCGcGCCGgC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 30451 | 0.66 | 0.213202 |
Target: 5'- aGCGUgaGCGCGGCgGCCuuCGCGuugcGCCa -3' miRNA: 3'- gCGUAg-CGCGCCGgCGGc-GCGC----CGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 36944 | 0.66 | 0.213202 |
Target: 5'- gCGUGUCGCaGcCGGCCaGCUaggcugcggGCGCGGuuGu -3' miRNA: 3'- -GCGUAGCG-C-GCCGG-CGG---------CGCGCCggC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 44889 | 0.66 | 0.213202 |
Target: 5'- gGCGUcaucggggCGgGCGGCgGCCGgGcCGGCUc -3' miRNA: 3'- gCGUA--------GCgCGCCGgCGGCgC-GCCGGc -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 27144 | 0.66 | 0.218517 |
Target: 5'- cCGCGUCgGCGauGuCCGacagCGCGCGcGCCGu -3' miRNA: 3'- -GCGUAG-CGCgcC-GGCg---GCGCGC-CGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 32659 | 0.66 | 0.218517 |
Target: 5'- uCGCucauuUCGCGCuGCC-UCGCGCcguaccuguacGGCCGg -3' miRNA: 3'- -GCGu----AGCGCGcCGGcGGCGCG-----------CCGGC- -5' |
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24284 | 3' | -66.7 | NC_005263.2 | + | 32908 | 0.66 | 0.218517 |
Target: 5'- gGCGUCG-GCGGcCCGCUGaC-CGGCUu -3' miRNA: 3'- gCGUAGCgCGCC-GGCGGC-GcGCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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