miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 3' -66.7 NC_005263.2 + 21911 1.07 0.000119
Target:  5'- cCGCAUCGCGCGGCCGCCGCGCGGCCGc -3'
miRNA:   3'- -GCGUAGCGCGCCGGCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 26192 0.79 0.020424
Target:  5'- uGCGgcCGCGCGGCgGCCGCgcgaugcgGCGGCCGu -3'
miRNA:   3'- gCGUa-GCGCGCCGgCGGCG--------CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 2342 0.79 0.020424
Target:  5'- aGCAcCGUGCGGCCGuuGCGCaGCUGg -3'
miRNA:   3'- gCGUaGCGCGCCGGCggCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 1633 0.79 0.022124
Target:  5'- aCGCGUCGUcgGCGGCguagcccuggaugCGCUGCGCGGUCGg -3'
miRNA:   3'- -GCGUAGCG--CGCCG-------------GCGGCGCGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 18135 0.78 0.024769
Target:  5'- gCGCugAUCGCGCugcccGCCGCUGCGCaGGCCGa -3'
miRNA:   3'- -GCG--UAGCGCGc----CGGCGGCGCG-CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 20719 0.78 0.026679
Target:  5'- aCGCAgccggucagCGCGcCGGCCGCCGCcgcgccgcucgcugGCGGCCu -3'
miRNA:   3'- -GCGUa--------GCGC-GCCGGCGGCG--------------CGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 16493 0.77 0.02765
Target:  5'- uGCGcCGCGCGGCCGUCGCGacCGGCa- -3'
miRNA:   3'- gCGUaGCGCGCCGGCGGCGC--GCCGgc -5'
24284 3' -66.7 NC_005263.2 + 35991 0.77 0.02842
Target:  5'- gCGCGUaauggCGCGCGcGCCGCUGCGCaugccaGGCCGc -3'
miRNA:   3'- -GCGUA-----GCGCGC-CGGCGGCGCG------CCGGC- -5'
24284 3' -66.7 NC_005263.2 + 22679 0.77 0.031718
Target:  5'- gCGguUCGUGCGGCCGCCGa-CGGuuGa -3'
miRNA:   3'- -GCguAGCGCGCCGGCGGCgcGCCggC- -5'
24284 3' -66.7 NC_005263.2 + 14136 0.77 0.03251
Target:  5'- cCGCAgcggccaGCGCGGCCGCCuuggcgacuucggGCcgGCGGCCGg -3'
miRNA:   3'- -GCGUag-----CGCGCCGGCGG-------------CG--CGCCGGC- -5'
24284 3' -66.7 NC_005263.2 + 41543 0.76 0.037382
Target:  5'- gCGCAaaCGCGCGGCgCGCCGUgGCGGCg- -3'
miRNA:   3'- -GCGUa-GCGCGCCG-GCGGCG-CGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 33846 0.76 0.038418
Target:  5'- gCGCGUUGCGcCGGCCGCCGCaa-GCCa -3'
miRNA:   3'- -GCGUAGCGC-GCCGGCGGCGcgcCGGc -5'
24284 3' -66.7 NC_005263.2 + 37414 0.76 0.039916
Target:  5'- uCGCGUCGCGCGGCCGUccucguCgucauacgucggcgcGCGCGGUCu -3'
miRNA:   3'- -GCGUAGCGCGCCGGCG------G---------------CGCGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 21433 0.75 0.042851
Target:  5'- gCGCAUCaauGgGCGGCCGUCGCGCguaucuggaacGGCCc -3'
miRNA:   3'- -GCGUAG---CgCGCCGGCGGCGCG-----------CCGGc -5'
24284 3' -66.7 NC_005263.2 + 29038 0.75 0.044035
Target:  5'- aCGCAccaGCGCGcGCagGCCGCGCGGCgCGu -3'
miRNA:   3'- -GCGUag-CGCGC-CGg-CGGCGCGCCG-GC- -5'
24284 3' -66.7 NC_005263.2 + 13842 0.75 0.045251
Target:  5'- uGCAUCGCGCGGUacucgggcaGCUGCGCGaGCa- -3'
miRNA:   3'- gCGUAGCGCGCCGg--------CGGCGCGC-CGgc -5'
24284 3' -66.7 NC_005263.2 + 33993 0.75 0.045251
Target:  5'- gGCuacgAUCGCGaCGGCgacCGCCGCGCaGCCGg -3'
miRNA:   3'- gCG----UAGCGC-GCCG---GCGGCGCGcCGGC- -5'
24284 3' -66.7 NC_005263.2 + 44665 0.74 0.047782
Target:  5'- uGCGUCGCGCGcGCCGaaGaagucgGCGGCCa -3'
miRNA:   3'- gCGUAGCGCGC-CGGCggCg-----CGCCGGc -5'
24284 3' -66.7 NC_005263.2 + 9519 0.74 0.047782
Target:  5'- gGCugaAUCGUGCGGCCG-UGCGCGGCa- -3'
miRNA:   3'- gCG---UAGCGCGCCGGCgGCGCGCCGgc -5'
24284 3' -66.7 NC_005263.2 + 42561 0.74 0.049099
Target:  5'- uGCAuUCGCGCcaGGCCGuuGC-CGGCCa -3'
miRNA:   3'- gCGU-AGCGCG--CCGGCggCGcGCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.