miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24284 5' -53.6 NC_005263.2 + 35081 0.66 0.805907
Target:  5'- aUCGUgcuaguaCC-CCAGGAuuggcaauuauCGACGGCGCAGa -3'
miRNA:   3'- gAGUA-------GGuGGUCCU-----------GUUGCUGCGUCc -5'
24284 5' -53.6 NC_005263.2 + 29066 0.66 0.787251
Target:  5'- -gCGUCC-UCGGGGCGGCG-CGCAucGGc -3'
miRNA:   3'- gaGUAGGuGGUCCUGUUGCuGCGU--CC- -5'
24284 5' -53.6 NC_005263.2 + 13437 0.66 0.777186
Target:  5'- aUCAUCCACCAcGuCGACGGuuUGUAGa -3'
miRNA:   3'- gAGUAGGUGGUcCuGUUGCU--GCGUCc -5'
24284 5' -53.6 NC_005263.2 + 36598 0.66 0.777186
Target:  5'- uUCAUCgCgcgcgACCAGugcaacaaGGCGACGGCGCAGu -3'
miRNA:   3'- gAGUAG-G-----UGGUC--------CUGUUGCUGCGUCc -5'
24284 5' -53.6 NC_005263.2 + 3906 0.66 0.777186
Target:  5'- gUCGUgguagCGCCGGGcgGCAAUGGCgGCAGGc -3'
miRNA:   3'- gAGUAg----GUGGUCC--UGUUGCUG-CGUCC- -5'
24284 5' -53.6 NC_005263.2 + 43289 0.66 0.766968
Target:  5'- -cUAUCCAgauuCCGGGcgGCGuaugagcgucacGCGACGCGGGc -3'
miRNA:   3'- gaGUAGGU----GGUCC--UGU------------UGCUGCGUCC- -5'
24284 5' -53.6 NC_005263.2 + 29444 0.66 0.756606
Target:  5'- -gCAUCCGCCAuuGCAuCGGCGUAGc -3'
miRNA:   3'- gaGUAGGUGGUccUGUuGCUGCGUCc -5'
24284 5' -53.6 NC_005263.2 + 40228 0.66 0.755563
Target:  5'- aUCAUCCGCCGauucccgcuuGGcACGcuguacgaagugcGCGACGCGGc -3'
miRNA:   3'- gAGUAGGUGGU----------CC-UGU-------------UGCUGCGUCc -5'
24284 5' -53.6 NC_005263.2 + 35633 0.67 0.746115
Target:  5'- ----gCCGCCAaGACGAUuGCGCAGGc -3'
miRNA:   3'- gaguaGGUGGUcCUGUUGcUGCGUCC- -5'
24284 5' -53.6 NC_005263.2 + 34770 0.67 0.746115
Target:  5'- uUCGUUCGCCGGcauCAGCauGACGCAGc -3'
miRNA:   3'- gAGUAGGUGGUCcu-GUUG--CUGCGUCc -5'
24284 5' -53.6 NC_005263.2 + 21225 0.67 0.735504
Target:  5'- gUCGUCgACCGGcuuucgcauCGACGGCGCGGu -3'
miRNA:   3'- gAGUAGgUGGUCcu-------GUUGCUGCGUCc -5'
24284 5' -53.6 NC_005263.2 + 32063 0.67 0.724787
Target:  5'- -gCAUCCACCGuguuGGACAGaccguCGACGCu-- -3'
miRNA:   3'- gaGUAGGUGGU----CCUGUU-----GCUGCGucc -5'
24284 5' -53.6 NC_005263.2 + 26874 0.67 0.724787
Target:  5'- aCUUcgUCGCCGGuGACGgcuGCGACGCGc- -3'
miRNA:   3'- -GAGuaGGUGGUC-CUGU---UGCUGCGUcc -5'
24284 5' -53.6 NC_005263.2 + 22880 0.67 0.72371
Target:  5'- uUCGUCgGCCGGGAUcggcACGGCGUucgugccggacggAGGu -3'
miRNA:   3'- gAGUAGgUGGUCCUGu---UGCUGCG-------------UCC- -5'
24284 5' -53.6 NC_005263.2 + 32569 0.67 0.713975
Target:  5'- aCUCG-CCGagguUCAGGACAACGAgCGCGa- -3'
miRNA:   3'- -GAGUaGGU----GGUCCUGUUGCU-GCGUcc -5'
24284 5' -53.6 NC_005263.2 + 35423 0.67 0.703081
Target:  5'- gUCGUuaCCACCAGugccggcguuGACAuCGACGCGGu -3'
miRNA:   3'- gAGUA--GGUGGUC----------CUGUuGCUGCGUCc -5'
24284 5' -53.6 NC_005263.2 + 6909 0.67 0.703081
Target:  5'- uCUCGUCCcaAUCAGGACGcacaGCG-CGCAa- -3'
miRNA:   3'- -GAGUAGG--UGGUCCUGU----UGCuGCGUcc -5'
24284 5' -53.6 NC_005263.2 + 14600 0.68 0.688813
Target:  5'- gCUCAaaUCCACCgacuuccaucugcaAGGGCG-CGACGaAGGg -3'
miRNA:   3'- -GAGU--AGGUGG--------------UCCUGUuGCUGCgUCC- -5'
24284 5' -53.6 NC_005263.2 + 9453 0.69 0.592082
Target:  5'- -aCGggCACCAcGGGCAGCGGCGCGc- -3'
miRNA:   3'- gaGUagGUGGU-CCUGUUGCUGCGUcc -5'
24284 5' -53.6 NC_005263.2 + 39107 0.69 0.592082
Target:  5'- --aAUCCugUGGGACGugGugGCcGGc -3'
miRNA:   3'- gagUAGGugGUCCUGUugCugCGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.