Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24287 | 3' | -54.1 | NC_005263.2 | + | 18599 | 0.78 | 0.214719 |
Target: 5'- gGCUGgaACGACGccAUGcgCGGGUUCGUGCa -3' miRNA: 3'- -UGGC--UGCUGC--UGCaaGCCCAAGCACG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 17142 | 0.68 | 0.691094 |
Target: 5'- cUCGGCGAagcgguCGACGUcgCGGuGUUCGgcugGCa -3' miRNA: 3'- uGGCUGCU------GCUGCAa-GCC-CAAGCa---CG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 35538 | 0.68 | 0.691094 |
Target: 5'- cCCGGCGGCGcGCGggCGGGcgCuacgGCg -3' miRNA: 3'- uGGCUGCUGC-UGCaaGCCCaaGca--CG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 25494 | 0.68 | 0.701889 |
Target: 5'- uCCGACGAUugGACGUUCGucauGGU-CG-GCg -3' miRNA: 3'- uGGCUGCUG--CUGCAAGC----CCAaGCaCG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 18162 | 0.67 | 0.712616 |
Target: 5'- uAUCGGCGGCGGCGUuggCGGcaUCGUc- -3' miRNA: 3'- -UGGCUGCUGCUGCAa--GCCcaAGCAcg -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 46485 | 0.67 | 0.712616 |
Target: 5'- cGCCGACGACG-CGUUCGacc-CGgaUGCg -3' miRNA: 3'- -UGGCUGCUGCuGCAAGCccaaGC--ACG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 2599 | 0.67 | 0.733823 |
Target: 5'- gAUCGAgCGuuuCGACGUagcccUCGGGUUUGUcGUa -3' miRNA: 3'- -UGGCU-GCu--GCUGCA-----AGCCCAAGCA-CG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 27887 | 0.67 | 0.744281 |
Target: 5'- gGCCGGCGGCG-CGcagUCGGGcaaagcacUCGacgGCg -3' miRNA: 3'- -UGGCUGCUGCuGCa--AGCCCa-------AGCa--CG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 23437 | 0.67 | 0.744281 |
Target: 5'- cGCuCGAUGuuCGGCGaUCGGGgugaGUGCu -3' miRNA: 3'- -UG-GCUGCu-GCUGCaAGCCCaag-CACG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 32879 | 0.68 | 0.669346 |
Target: 5'- uGCCGGCgGGCGGCGaguUUCGuGGcgUCG-GCg -3' miRNA: 3'- -UGGCUG-CUGCUGC---AAGC-CCa-AGCaCG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 22064 | 0.68 | 0.647459 |
Target: 5'- uGCCG-CGACGAUcc-CGGGUgUCGUGg -3' miRNA: 3'- -UGGCuGCUGCUGcaaGCCCA-AGCACg -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 16581 | 0.77 | 0.232289 |
Target: 5'- gGCCGGCGGCGACGcguucgcCGGGcUCGcGCg -3' miRNA: 3'- -UGGCUGCUGCUGCaa-----GCCCaAGCaCG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 3150 | 0.72 | 0.427218 |
Target: 5'- cACCGACGAgcACGUggcCGGGcUUCGUGg -3' miRNA: 3'- -UGGCUGCUgcUGCAa--GCCC-AAGCACg -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 7362 | 0.72 | 0.436802 |
Target: 5'- cGCCGgugACGaucGCGGCGaUCGGGUUgGUGUu -3' miRNA: 3'- -UGGC---UGC---UGCUGCaAGCCCAAgCACG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 38918 | 0.72 | 0.454359 |
Target: 5'- aGCCGGCGccgcgccgagcuCGACGUcgcgcaUCGGcUUCGUGCa -3' miRNA: 3'- -UGGCUGCu-----------GCUGCA------AGCCcAAGCACG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 12907 | 0.7 | 0.537621 |
Target: 5'- uUCGACGAacuggacgacaaaCGGCGUagcCGGGUaCGUGCu -3' miRNA: 3'- uGGCUGCU-------------GCUGCAa--GCCCAaGCACG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 12631 | 0.69 | 0.603595 |
Target: 5'- aACUG-CGACGACG-UCGGuUUCG-GCg -3' miRNA: 3'- -UGGCuGCUGCUGCaAGCCcAAGCaCG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 35459 | 0.69 | 0.603595 |
Target: 5'- gGCCGACGACGAUa-UCGacggCGUGCu -3' miRNA: 3'- -UGGCUGCUGCUGcaAGCccaaGCACG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 37840 | 0.69 | 0.625515 |
Target: 5'- cGCCGACG-CGGCGuUUCGcGaaccgCGUGCg -3' miRNA: 3'- -UGGCUGCuGCUGC-AAGC-Ccaa--GCACG- -5' |
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24287 | 3' | -54.1 | NC_005263.2 | + | 25067 | 0.66 | 0.774929 |
Target: 5'- cCCGACGuCGACcggcaaUUCGGGUggCGcugGCa -3' miRNA: 3'- uGGCUGCuGCUGc-----AAGCCCAa-GCa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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