miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24287 3' -54.1 NC_005263.2 + 24031 0.75 0.314852
Target:  5'- gGCCGGauCGGuCGACGUgucCGGGUUCGcGCu -3'
miRNA:   3'- -UGGCU--GCU-GCUGCAa--GCCCAAGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 9493 0.66 0.764845
Target:  5'- cGCCGGCGcuauccauCG-CGUgcgCGGGcugaaUCGUGCg -3'
miRNA:   3'- -UGGCUGCu-------GCuGCAa--GCCCa----AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 23047 0.66 0.764845
Target:  5'- uGCCGGu--CGACG-UCGGGaucgUCGUGUu -3'
miRNA:   3'- -UGGCUgcuGCUGCaAGCCCa---AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 13750 0.66 0.793676
Target:  5'- cGCCGGCGGCcaggccgGAUGUgUCGGcuuucucuUUCGUGCc -3'
miRNA:   3'- -UGGCUGCUG-------CUGCA-AGCCc-------AAGCACG- -5'
24287 3' -54.1 NC_005263.2 + 11395 0.7 0.570918
Target:  5'- gGCCuGCGcgcACGugGUUCGGGcgCG-GCu -3'
miRNA:   3'- -UGGcUGC---UGCugCAAGCCCaaGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 30224 0.7 0.570918
Target:  5'- cGCCGGuCGACuGAuCGUUCGcGGcgaagCGUGCg -3'
miRNA:   3'- -UGGCU-GCUG-CU-GCAAGC-CCaa---GCACG- -5'
24287 3' -54.1 NC_005263.2 + 18262 0.69 0.603595
Target:  5'- aGCCGAUcGCaGGCGUUcCGGGcgaugcgcucgUCGUGCg -3'
miRNA:   3'- -UGGCUGcUG-CUGCAA-GCCCa----------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 13963 0.69 0.636489
Target:  5'- -aCG-CGGCGcGCGUUCGcGGggCGUGUa -3'
miRNA:   3'- ugGCuGCUGC-UGCAAGC-CCaaGCACG- -5'
24287 3' -54.1 NC_005263.2 + 4657 0.68 0.691094
Target:  5'- -gCGACGGgcaggcCGGCGcgCGGGUcuuucgucaggaUCGUGCc -3'
miRNA:   3'- ugGCUGCU------GCUGCaaGCCCA------------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 14028 0.68 0.701889
Target:  5'- -gCGACGGCGACGgUUCGGccaCGgGCg -3'
miRNA:   3'- ugGCUGCUGCUGC-AAGCCcaaGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 1423 0.68 0.680243
Target:  5'- uGCCGACGGCcGgGUUCGuaaucgugaGGUcuugcugcaguuUCGUGCg -3'
miRNA:   3'- -UGGCUGCUGcUgCAAGC---------CCA------------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 24502 0.74 0.356127
Target:  5'- aGCCGaACGGCGcguacgucaGCGUcuuguagacauagugCGGGUUCGUGCc -3'
miRNA:   3'- -UGGC-UGCUGC---------UGCAa--------------GCCCAAGCACG- -5'
24287 3' -54.1 NC_005263.2 + 8457 0.67 0.733823
Target:  5'- ---uACGACuGACGUUgCGGGUaguugauguUCGUGCc -3'
miRNA:   3'- uggcUGCUG-CUGCAA-GCCCA---------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 22493 0.73 0.390168
Target:  5'- cGCCGGCGGCGGCcggCGgcGGUUCG-GCg -3'
miRNA:   3'- -UGGCUGCUGCUGcaaGC--CCAAGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 29055 0.68 0.669346
Target:  5'- gGCCGcGCGGCG-CGUccUCGGGgcggCGcGCa -3'
miRNA:   3'- -UGGC-UGCUGCuGCA--AGCCCaa--GCaCG- -5'
24287 3' -54.1 NC_005263.2 + 26893 0.67 0.754625
Target:  5'- aGCCGGuCGACGACa---GGaUUUGUGCa -3'
miRNA:   3'- -UGGCU-GCUGCUGcaagCCcAAGCACG- -5'
24287 3' -54.1 NC_005263.2 + 40995 0.66 0.764845
Target:  5'- cGCaCGGCaGGCGAaaCGuUUCGGGccguucgacUUCGUGCu -3'
miRNA:   3'- -UG-GCUG-CUGCU--GC-AAGCCC---------AAGCACG- -5'
24287 3' -54.1 NC_005263.2 + 25797 0.72 0.436802
Target:  5'- gUCGACGcccGCGACGcugccaUUCGGGUUCGcaaUGCc -3'
miRNA:   3'- uGGCUGC---UGCUGC------AAGCCCAAGC---ACG- -5'
24287 3' -54.1 NC_005263.2 + 18601 0.69 0.603595
Target:  5'- cGCCGACgGACGcCGcagCGGcGUUCGcgGCa -3'
miRNA:   3'- -UGGCUG-CUGCuGCaa-GCC-CAAGCa-CG- -5'
24287 3' -54.1 NC_005263.2 + 24457 1.11 0.001159
Target:  5'- aACCGACGACGACGUUCGGGUUCGUGCc -3'
miRNA:   3'- -UGGCUGCUGCUGCAAGCCCAAGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.