miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24287 3' -54.1 NC_005263.2 + 1423 0.68 0.680243
Target:  5'- uGCCGACGGCcGgGUUCGuaaucgugaGGUcuugcugcaguuUCGUGCg -3'
miRNA:   3'- -UGGCUGCUGcUgCAAGC---------CCA------------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 2599 0.67 0.733823
Target:  5'- gAUCGAgCGuuuCGACGUagcccUCGGGUUUGUcGUa -3'
miRNA:   3'- -UGGCU-GCu--GCUGCA-----AGCCCAAGCA-CG- -5'
24287 3' -54.1 NC_005263.2 + 3150 0.72 0.427218
Target:  5'- cACCGACGAgcACGUggcCGGGcUUCGUGg -3'
miRNA:   3'- -UGGCUGCUgcUGCAa--GCCC-AAGCACg -5'
24287 3' -54.1 NC_005263.2 + 4657 0.68 0.691094
Target:  5'- -gCGACGGgcaggcCGGCGcgCGGGUcuuucgucaggaUCGUGCc -3'
miRNA:   3'- ugGCUGCU------GCUGCaaGCCCA------------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 7362 0.72 0.436802
Target:  5'- cGCCGgugACGaucGCGGCGaUCGGGUUgGUGUu -3'
miRNA:   3'- -UGGC---UGC---UGCUGCaAGCCCAAgCACG- -5'
24287 3' -54.1 NC_005263.2 + 8457 0.67 0.733823
Target:  5'- ---uACGACuGACGUUgCGGGUaguugauguUCGUGCc -3'
miRNA:   3'- uggcUGCUG-CUGCAA-GCCCA---------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 9493 0.66 0.764845
Target:  5'- cGCCGGCGcuauccauCG-CGUgcgCGGGcugaaUCGUGCg -3'
miRNA:   3'- -UGGCUGCu-------GCuGCAa--GCCCa----AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 11395 0.7 0.570918
Target:  5'- gGCCuGCGcgcACGugGUUCGGGcgCG-GCu -3'
miRNA:   3'- -UGGcUGC---UGCugCAAGCCCaaGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 12631 0.69 0.603595
Target:  5'- aACUG-CGACGACG-UCGGuUUCG-GCg -3'
miRNA:   3'- -UGGCuGCUGCUGCaAGCCcAAGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 12907 0.7 0.537621
Target:  5'- uUCGACGAacuggacgacaaaCGGCGUagcCGGGUaCGUGCu -3'
miRNA:   3'- uGGCUGCU-------------GCUGCAa--GCCCAaGCACG- -5'
24287 3' -54.1 NC_005263.2 + 13750 0.66 0.793676
Target:  5'- cGCCGGCGGCcaggccgGAUGUgUCGGcuuucucuUUCGUGCc -3'
miRNA:   3'- -UGGCUGCUG-------CUGCA-AGCCc-------AAGCACG- -5'
24287 3' -54.1 NC_005263.2 + 13963 0.69 0.636489
Target:  5'- -aCG-CGGCGcGCGUUCGcGGggCGUGUa -3'
miRNA:   3'- ugGCuGCUGC-UGCAAGC-CCaaGCACG- -5'
24287 3' -54.1 NC_005263.2 + 14028 0.68 0.701889
Target:  5'- -gCGACGGCGACGgUUCGGccaCGgGCg -3'
miRNA:   3'- ugGCUGCUGCUGC-AAGCCcaaGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 16581 0.77 0.232289
Target:  5'- gGCCGGCGGCGACGcguucgcCGGGcUCGcGCg -3'
miRNA:   3'- -UGGCUGCUGCUGCaa-----GCCCaAGCaCG- -5'
24287 3' -54.1 NC_005263.2 + 17142 0.68 0.691094
Target:  5'- cUCGGCGAagcgguCGACGUcgCGGuGUUCGgcugGCa -3'
miRNA:   3'- uGGCUGCU------GCUGCAa-GCC-CAAGCa---CG- -5'
24287 3' -54.1 NC_005263.2 + 18162 0.67 0.712616
Target:  5'- uAUCGGCGGCGGCGUuggCGGcaUCGUc- -3'
miRNA:   3'- -UGGCUGCUGCUGCAa--GCCcaAGCAcg -5'
24287 3' -54.1 NC_005263.2 + 18262 0.69 0.603595
Target:  5'- aGCCGAUcGCaGGCGUUcCGGGcgaugcgcucgUCGUGCg -3'
miRNA:   3'- -UGGCUGcUG-CUGCAA-GCCCa----------AGCACG- -5'
24287 3' -54.1 NC_005263.2 + 18599 0.78 0.214719
Target:  5'- gGCUGgaACGACGccAUGcgCGGGUUCGUGCa -3'
miRNA:   3'- -UGGC--UGCUGC--UGCaaGCCCAAGCACG- -5'
24287 3' -54.1 NC_005263.2 + 18601 0.69 0.603595
Target:  5'- cGCCGACgGACGcCGcagCGGcGUUCGcgGCa -3'
miRNA:   3'- -UGGCUG-CUGCuGCaa-GCC-CAAGCa-CG- -5'
24287 3' -54.1 NC_005263.2 + 22064 0.68 0.647459
Target:  5'- uGCCG-CGACGAUcc-CGGGUgUCGUGg -3'
miRNA:   3'- -UGGCuGCUGCUGcaaGCCCA-AGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.