miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24287 5' -57.3 NC_005263.2 + 1443 0.67 0.531891
Target:  5'- -cGCGcGAGGCUucGCGGCGCucGCGg -3'
miRNA:   3'- caCGC-CUUCGGcuUGCCGCGcaUGCa -5'
24287 5' -57.3 NC_005263.2 + 3731 0.68 0.440408
Target:  5'- -cGCGcacgccGGGCCGGAuCaGCGCGUACGUg -3'
miRNA:   3'- caCGCc-----UUCGGCUU-GcCGCGCAUGCA- -5'
24287 5' -57.3 NC_005263.2 + 4065 0.67 0.510882
Target:  5'- cGUGUuccagauccaGAAGUCGAACGGUGCGUuguGCGc -3'
miRNA:   3'- -CACGc---------CUUCGGCUUGCCGCGCA---UGCa -5'
24287 5' -57.3 NC_005263.2 + 4538 0.67 0.521345
Target:  5'- cGUGCGGcgcuguGCCGAcgGCGGCauugacGCGUAUa- -3'
miRNA:   3'- -CACGCCuu----CGGCU--UGCCG------CGCAUGca -5'
24287 5' -57.3 NC_005263.2 + 5587 0.68 0.469968
Target:  5'- uGUGCGGccGUCGGgcauccgcACGGCGaggcCGUGCGg -3'
miRNA:   3'- -CACGCCuuCGGCU--------UGCCGC----GCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 5856 0.7 0.350134
Target:  5'- cGUGCGGucgAAGUCGAGCcgcaGGCG-GUACGg -3'
miRNA:   3'- -CACGCC---UUCGGCUUG----CCGCgCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 7690 0.67 0.480045
Target:  5'- --cCGGGuucgagucGGCCGcGCGGCGUGUGCa- -3'
miRNA:   3'- cacGCCU--------UCGGCuUGCCGCGCAUGca -5'
24287 5' -57.3 NC_005263.2 + 9195 0.69 0.384628
Target:  5'- -cGCGGguGCgcaaaCGGGCGGCGCucGUACGg -3'
miRNA:   3'- caCGCCuuCG-----GCUUGCCGCG--CAUGCa -5'
24287 5' -57.3 NC_005263.2 + 9511 0.69 0.402699
Target:  5'- cGUGCGcGGGCUGAaucguGCGGC-CGUGCGc -3'
miRNA:   3'- -CACGCcUUCGGCU-----UGCCGcGCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 10068 0.69 0.402699
Target:  5'- -cGCacuGGAAGCCGAGCGaCGCGggcagcGCGUc -3'
miRNA:   3'- caCG---CCUUCGGCUUGCcGCGCa-----UGCA- -5'
24287 5' -57.3 NC_005263.2 + 11894 0.67 0.510882
Target:  5'- -cGCGGc-GCCGGGCGccuGCGCGcugGCGUc -3'
miRNA:   3'- caCGCCuuCGGCUUGC---CGCGCa--UGCA- -5'
24287 5' -57.3 NC_005263.2 + 12293 0.71 0.305643
Target:  5'- -cGUGGAAgaacucgucguacuuGCCGAGCGGCGCcagcACGUa -3'
miRNA:   3'- caCGCCUU---------------CGGCUUGCCGCGca--UGCA- -5'
24287 5' -57.3 NC_005263.2 + 12549 0.69 0.367102
Target:  5'- -cGCGGcGGCCG-GCGGCGcCGUaGCGc -3'
miRNA:   3'- caCGCCuUCGGCuUGCCGC-GCA-UGCa -5'
24287 5' -57.3 NC_005263.2 + 13086 0.7 0.325743
Target:  5'- aGUGCGucGAGGCCGGacaGCGGCGUGU-UGa -3'
miRNA:   3'- -CACGC--CUUCGGCU---UGCCGCGCAuGCa -5'
24287 5' -57.3 NC_005263.2 + 14444 0.66 0.553203
Target:  5'- cGUGCGcGcgcgccucuuucGAGCCGAGCGGCG-GcACGc -3'
miRNA:   3'- -CACGC-C------------UUCGGCUUGCCGCgCaUGCa -5'
24287 5' -57.3 NC_005263.2 + 15276 0.68 0.46
Target:  5'- -cGCGGc-GCUGAAgGGCGCcgaGUACGa -3'
miRNA:   3'- caCGCCuuCGGCUUgCCGCG---CAUGCa -5'
24287 5' -57.3 NC_005263.2 + 17379 0.67 0.531891
Target:  5'- -cGCGuGAAGCUGucugcCGGCGCGgcCGc -3'
miRNA:   3'- caCGC-CUUCGGCuu---GCCGCGCauGCa -5'
24287 5' -57.3 NC_005263.2 + 18604 0.66 0.563955
Target:  5'- -cGaCGGAcGCCGcAGCGGCGUucGCGg -3'
miRNA:   3'- caC-GCCUuCGGC-UUGCCGCGcaUGCa -5'
24287 5' -57.3 NC_005263.2 + 20411 0.69 0.375796
Target:  5'- aUGCGGccGCCGGcgcCGGCGCGcACa- -3'
miRNA:   3'- cACGCCuuCGGCUu--GCCGCGCaUGca -5'
24287 5' -57.3 NC_005263.2 + 20904 0.75 0.157317
Target:  5'- --aCGGGAugacGCCGGAUGGCGUGUACGg -3'
miRNA:   3'- cacGCCUU----CGGCUUGCCGCGCAUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.