miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24287 5' -57.3 NC_005263.2 + 24494 1.07 0.000803
Target:  5'- cGUGCGGAAGCCGAACGGCGCGUACGUc -3'
miRNA:   3'- -CACGCCUUCGGCUUGCCGCGCAUGCA- -5'
24287 5' -57.3 NC_005263.2 + 22369 0.67 0.480045
Target:  5'- -gGCGGAcaGGUCGugcACGGCGCGcaGCGc -3'
miRNA:   3'- caCGCCU--UCGGCu--UGCCGCGCa-UGCa -5'
24287 5' -57.3 NC_005263.2 + 39348 0.66 0.553203
Target:  5'- -gGCuGGcAGCCGAuucgcucggcgGCGGCGCGcuucUACGa -3'
miRNA:   3'- caCG-CCuUCGGCU-----------UGCCGCGC----AUGCa -5'
24287 5' -57.3 NC_005263.2 + 37710 0.66 0.585617
Target:  5'- -cGcCGGAcccgcucgccGGCCGGccCGGCGCGUgGCGg -3'
miRNA:   3'- caC-GCCU----------UCGGCUu-GCCGCGCA-UGCa -5'
24287 5' -57.3 NC_005263.2 + 25699 0.71 0.302637
Target:  5'- --aCGGcGAGCaCG-GCGGCGCGUACGUu -3'
miRNA:   3'- cacGCC-UUCG-GCuUGCCGCGCAUGCA- -5'
24287 5' -57.3 NC_005263.2 + 12293 0.71 0.305643
Target:  5'- -cGUGGAAgaacucgucguacuuGCCGAGCGGCGCcagcACGUa -3'
miRNA:   3'- caCGCCUU---------------CGGCUUGCCGCGca--UGCA- -5'
24287 5' -57.3 NC_005263.2 + 39082 0.7 0.325743
Target:  5'- -cGCGcuucguuGAGCCGGACGGCGaGUACGc -3'
miRNA:   3'- caCGCc------UUCGGCUUGCCGCgCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 44774 0.7 0.333731
Target:  5'- -cGCGGc-GCCG-GCGGCGCGcagACGUu -3'
miRNA:   3'- caCGCCuuCGGCuUGCCGCGCa--UGCA- -5'
24287 5' -57.3 NC_005263.2 + 42054 0.69 0.384628
Target:  5'- -cGCGuGAAGCgcgccgccaaCGAACGGgGCGUGCu- -3'
miRNA:   3'- caCGC-CUUCG----------GCUUGCCgCGCAUGca -5'
24287 5' -57.3 NC_005263.2 + 32646 0.68 0.469968
Target:  5'- -aGCGGccgaAAGCCuuccGGAUGGCGCGggucgGCGg -3'
miRNA:   3'- caCGCC----UUCGG----CUUGCCGCGCa----UGCa -5'
24287 5' -57.3 NC_005263.2 + 3731 0.68 0.440408
Target:  5'- -cGCGcacgccGGGCCGGAuCaGCGCGUACGUg -3'
miRNA:   3'- caCGCc-----UUCGGCUU-GcCGCGCAUGCA- -5'
24287 5' -57.3 NC_005263.2 + 20411 0.69 0.375796
Target:  5'- aUGCGGccGCCGGcgcCGGCGCGcACa- -3'
miRNA:   3'- cACGCCuuCGGCUu--GCCGCGCaUGca -5'
24287 5' -57.3 NC_005263.2 + 20904 0.75 0.157317
Target:  5'- --aCGGGAugacGCCGGAUGGCGUGUACGg -3'
miRNA:   3'- cacGCCUU----CGGCUUGCCGCGCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 21166 0.68 0.450145
Target:  5'- -gGCGGcuacgccacgGGGCCGGacgcggacgcgcGCGGCGCGgGCGa -3'
miRNA:   3'- caCGCC----------UUCGGCU------------UGCCGCGCaUGCa -5'
24287 5' -57.3 NC_005263.2 + 29049 0.72 0.259594
Target:  5'- -cGCGcAGGCCGcGCGGCGCGUccucgggGCGg -3'
miRNA:   3'- caCGCcUUCGGCuUGCCGCGCA-------UGCa -5'
24287 5' -57.3 NC_005263.2 + 12549 0.69 0.367102
Target:  5'- -cGCGGcGGCCG-GCGGCGcCGUaGCGc -3'
miRNA:   3'- caCGCCuUCGGCuUGCCGC-GCA-UGCa -5'
24287 5' -57.3 NC_005263.2 + 5587 0.68 0.469968
Target:  5'- uGUGCGGccGUCGGgcauccgcACGGCGaggcCGUGCGg -3'
miRNA:   3'- -CACGCCuuCGGCU--------UGCCGC----GCAUGCa -5'
24287 5' -57.3 NC_005263.2 + 11894 0.67 0.510882
Target:  5'- -cGCGGc-GCCGGGCGccuGCGCGcugGCGUc -3'
miRNA:   3'- caCGCCuuCGGCUUGC---CGCGCa--UGCA- -5'
24287 5' -57.3 NC_005263.2 + 47356 0.71 0.287946
Target:  5'- cUGCGcGucGCCGAaauggGCGGCGCGUuCGa -3'
miRNA:   3'- cACGC-CuuCGGCU-----UGCCGCGCAuGCa -5'
24287 5' -57.3 NC_005263.2 + 13086 0.7 0.325743
Target:  5'- aGUGCGucGAGGCCGGacaGCGGCGUGU-UGa -3'
miRNA:   3'- -CACGC--CUUCGGCU---UGCCGCGCAuGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.