Results 1 - 20 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 28408 | 0.66 | 0.880021 |
Target: 5'- aUACCcccggaggCGcCGGCACGCGcgUGAAcgUCg -3' miRNA: 3'- aGUGGaa------GC-GCCGUGCGCa-ACUUa-AG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 20031 | 0.66 | 0.880021 |
Target: 5'- aCACaCgggaUCGUGcCGCGCGUUGAGUg- -3' miRNA: 3'- aGUG-Ga---AGCGCcGUGCGCAACUUAag -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 5913 | 0.66 | 0.871966 |
Target: 5'- gCGCCcggCGCGGCGUGCGUacgGAucagauAUUCg -3' miRNA: 3'- aGUGGaa-GCGCCGUGCGCAa--CU------UAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 1279 | 0.66 | 0.871966 |
Target: 5'- gCGCCgcc-UGGCGCGCGUUGcGUUa -3' miRNA: 3'- aGUGGaagcGCCGUGCGCAACuUAAg -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 41537 | 0.66 | 0.871966 |
Target: 5'- gCGCCUgcgcaaacgCGCGGCGCGCcgUGGc--- -3' miRNA: 3'- aGUGGAa--------GCGCCGUGCGcaACUuaag -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 7361 | 0.66 | 0.863643 |
Target: 5'- cCGCCggugacgaUCGCGGCGauCGgGUUGGuGUUCu -3' miRNA: 3'- aGUGGa-------AGCGCCGU--GCgCAACU-UAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 13970 | 0.66 | 0.863643 |
Target: 5'- gCGCgUUCGCGGgGCGUGU--AGUUg -3' miRNA: 3'- aGUGgAAGCGCCgUGCGCAacUUAAg -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 29249 | 0.66 | 0.863643 |
Target: 5'- gCGCCga---GGCACGCGUUG--UUCa -3' miRNA: 3'- aGUGGaagcgCCGUGCGCAACuuAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 4978 | 0.66 | 0.855059 |
Target: 5'- -aGCCUUCG-GGCA---GUUGAAUUCg -3' miRNA: 3'- agUGGAAGCgCCGUgcgCAACUUAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 40609 | 0.66 | 0.855059 |
Target: 5'- cUCGCCgUCaGCGGUGCGCGgcac-UUCg -3' miRNA: 3'- -AGUGGaAG-CGCCGUGCGCaacuuAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 24798 | 0.66 | 0.855059 |
Target: 5'- cUCGCCgggCGuCGGCGgCGCGU---AUUCg -3' miRNA: 3'- -AGUGGaa-GC-GCCGU-GCGCAacuUAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 11384 | 0.67 | 0.827828 |
Target: 5'- cCACUUcUCGCGGCcuGCGCGcacgUG-GUUCg -3' miRNA: 3'- aGUGGA-AGCGCCG--UGCGCa---ACuUAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 6919 | 0.67 | 0.818292 |
Target: 5'- aCACCUUCGCGucgaacagaccGCACuGCGUgagcgGAAcggccUUCa -3' miRNA: 3'- aGUGGAAGCGC-----------CGUG-CGCAa----CUU-----AAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 36516 | 0.67 | 0.818292 |
Target: 5'- cCACUUcaUCGCGGgGCGCGaccUGAAa-- -3' miRNA: 3'- aGUGGA--AGCGCCgUGCGCa--ACUUaag -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 10095 | 0.67 | 0.808545 |
Target: 5'- gCugCUUCaguGCGGCAccaauCGUGgcGAGUUCg -3' miRNA: 3'- aGugGAAG---CGCCGU-----GCGCaaCUUAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 3710 | 0.68 | 0.788461 |
Target: 5'- aCGCCaaUGCcGCGCGCGUUGAu--- -3' miRNA: 3'- aGUGGaaGCGcCGUGCGCAACUuaag -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 19390 | 0.68 | 0.788461 |
Target: 5'- -aGCCUcggcggCGCGcaguacggcaacGCGCGCGUUGAgguGUUCg -3' miRNA: 3'- agUGGAa-----GCGC------------CGUGCGCAACU---UAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 39570 | 0.68 | 0.767673 |
Target: 5'- aCAUCggUUGCGGCGCcGaUGUUGAcgUCg -3' miRNA: 3'- aGUGGa-AGCGCCGUG-C-GCAACUuaAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 5195 | 0.68 | 0.767673 |
Target: 5'- aUCGCCUgcaggCGCGGCGuCGCuaccGUcgcGAAUUCc -3' miRNA: 3'- -AGUGGAa----GCGCCGU-GCG----CAa--CUUAAG- -5' |
|||||||
24294 | 3' | -51.4 | NC_005263.2 | + | 44778 | 0.68 | 0.767673 |
Target: 5'- gCGCCg--GCGGCGCGCagacGUUGAAc-- -3' miRNA: 3'- aGUGGaagCGCCGUGCG----CAACUUaag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home