miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 12510 0.68 0.54809
Target:  5'- -cGCGCCggCuuCGCGCGgGUUGgCGUu -3'
miRNA:   3'- cuUGUGGa-GuuGCGCGCgCAACgGCA- -5'
24296 3' -55.4 NC_005263.2 + 12561 0.66 0.68109
Target:  5'- cGGCGCCgUAGCGCccgcccGCGCGccGCCGg -3'
miRNA:   3'- cUUGUGGaGUUGCG------CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 13283 0.68 0.559006
Target:  5'- cGACACCgacUGGCGCGUGCGcaGCCa- -3'
miRNA:   3'- cUUGUGGa--GUUGCGCGCGCaaCGGca -5'
24296 3' -55.4 NC_005263.2 + 15550 0.72 0.303073
Target:  5'- ---aACCUCGGCGaguaaGCGCGUgGCCGg -3'
miRNA:   3'- cuugUGGAGUUGCg----CGCGCAaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 15556 0.66 0.636623
Target:  5'- cGGCGCa--GACGCGCGCGcugaacGCCGa -3'
miRNA:   3'- cUUGUGgagUUGCGCGCGCaa----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 15780 0.66 0.625469
Target:  5'- cAGCugCUCGACGaccacuGCGCGcUGCuCGUc -3'
miRNA:   3'- cUUGugGAGUUGCg-----CGCGCaACG-GCA- -5'
24296 3' -55.4 NC_005263.2 + 16342 0.71 0.36884
Target:  5'- aAACGCUUCGACGagacgaaGCGCGcgGCCGc -3'
miRNA:   3'- cUUGUGGAGUUGCg------CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 16475 0.7 0.424212
Target:  5'- cGAACACCgagaCGGCGCuGCGCcgcgcgGCCGUc -3'
miRNA:   3'- -CUUGUGGa---GUUGCG-CGCGcaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 16572 0.66 0.658908
Target:  5'- cGACGCCaaggcCGGCgGCGaCGCGUUcGCCGg -3'
miRNA:   3'- cUUGUGGa----GUUG-CGC-GCGCAA-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 16988 0.66 0.68109
Target:  5'- cGAAUACCUgAGCGaCGCGacc-GCCGa -3'
miRNA:   3'- -CUUGUGGAgUUGC-GCGCgcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 17485 0.67 0.603189
Target:  5'- uGAACGCCcUGAuCGCGCGCGgcgcGUCGa -3'
miRNA:   3'- -CUUGUGGaGUU-GCGCGCGCaa--CGGCa -5'
24296 3' -55.4 NC_005263.2 + 18440 0.66 0.625469
Target:  5'- uGAAC-CgCUCGAgGUGCGCGUgaagcaGCCGc -3'
miRNA:   3'- -CUUGuG-GAGUUgCGCGCGCAa-----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 18861 0.68 0.547002
Target:  5'- uGAACaacgcguGCCUCGGCGCGCcgcuGCGc-GCCGa -3'
miRNA:   3'- -CUUG-------UGGAGUUGCGCG----CGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 19401 0.7 0.411795
Target:  5'- -cGCGCaguacggCAACGCGCGCGUugagguguucggcgUGCCGc -3'
miRNA:   3'- cuUGUGga-----GUUGCGCGCGCA--------------ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 19622 0.67 0.602077
Target:  5'- cGAACGCCUCGuACGCGUugauggcugaaguGaUGUcGCCGUa -3'
miRNA:   3'- -CUUGUGGAGU-UGCGCG-------------C-GCAaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 20352 0.66 0.670017
Target:  5'- -cGCACCUCgGGgGCGCGCaugGCUGa -3'
miRNA:   3'- cuUGUGGAG-UUgCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 20969 0.66 0.625469
Target:  5'- cGGACAUCgcCGACGCggcugcgcgccuGCGCGUcgacgUGCCGg -3'
miRNA:   3'- -CUUGUGGa-GUUGCG------------CGCGCA-----ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 21185 0.67 0.614321
Target:  5'- cGGACGCg--GACGCGCGCGgcGCgGg -3'
miRNA:   3'- -CUUGUGgagUUGCGCGCGCaaCGgCa -5'
24296 3' -55.4 NC_005263.2 + 21296 0.68 0.557912
Target:  5'- uGGGCGCCaacuacgCGACGUGCGgGUUcacgaacGCCGUc -3'
miRNA:   3'- -CUUGUGGa------GUUGCGCGCgCAA-------CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 21558 0.66 0.68109
Target:  5'- aGAGCACUggccguucCAGCGC-CGCGUgcucGCCGc -3'
miRNA:   3'- -CUUGUGGa-------GUUGCGcGCGCAa---CGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.