miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 670 0.81 0.08079
Target:  5'- cGAACGCCUCAucguaGCGCGCcUUGCCGa -3'
miRNA:   3'- -CUUGUGGAGUug---CGCGCGcAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 1614 0.69 0.453698
Target:  5'- cGGACACUUCGACGCcgaGUGCGUcgGUCa- -3'
miRNA:   3'- -CUUGUGGAGUUGCG---CGCGCAa-CGGca -5'
24296 3' -55.4 NC_005263.2 + 2263 0.66 0.647773
Target:  5'- --gUugUUCgAGCGCaGCGCGUUcGCCGUc -3'
miRNA:   3'- cuuGugGAG-UUGCG-CGCGCAA-CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 3340 0.66 0.636623
Target:  5'- -cGCGCCgcCGGCGcCGCGCGcgGUCGa -3'
miRNA:   3'- cuUGUGGa-GUUGC-GCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 3708 0.66 0.68109
Target:  5'- cGACGCCaaugcCGCGCGCGUUGauaCGc -3'
miRNA:   3'- cUUGUGGaguu-GCGCGCGCAACg--GCa -5'
24296 3' -55.4 NC_005263.2 + 3722 0.77 0.15138
Target:  5'- uGAGCGCCUCGcgcACGCcgggccggaucaGCGCGUacgUGCCGUa -3'
miRNA:   3'- -CUUGUGGAGU---UGCG------------CGCGCA---ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 3940 0.66 0.68109
Target:  5'- uAGCGCCUCGcACGCGCcagccaGCGagccuggcagGCCGUu -3'
miRNA:   3'- cUUGUGGAGU-UGCGCG------CGCaa--------CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 4462 0.68 0.559006
Target:  5'- cGAGCACUUCuucguccguGCGCGCGgGUcGgCGUg -3'
miRNA:   3'- -CUUGUGGAGu--------UGCGCGCgCAaCgGCA- -5'
24296 3' -55.4 NC_005263.2 + 4848 0.68 0.526469
Target:  5'- ---uGCC-CGuACGCGCGCGccgUGCCGa -3'
miRNA:   3'- cuugUGGaGU-UGCGCGCGCa--ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 5251 0.68 0.526469
Target:  5'- aGGCGCCgUCAucaGCGgGCGgUGCCGg -3'
miRNA:   3'- cUUGUGG-AGUug-CGCgCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 6173 0.69 0.472937
Target:  5'- -uGCGCCUUgAGCgGCGCGCGUUucgcauucaggaaGCCGg -3'
miRNA:   3'- cuUGUGGAG-UUG-CGCGCGCAA-------------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 8989 0.68 0.547002
Target:  5'- cGAGCGCCgacgcaCGGCGCacgagucGCGCGUacucGCCGUc -3'
miRNA:   3'- -CUUGUGGa-----GUUGCG-------CGCGCAa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 9071 0.67 0.603189
Target:  5'- uAGCGCCUCGACGUGCcaguuCGggucgaucgGCCGg -3'
miRNA:   3'- cUUGUGGAGUUGCGCGc----GCaa-------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 9700 0.66 0.68109
Target:  5'- -cGCACC-CGACGCGCGacaGUgcGUCGa -3'
miRNA:   3'- cuUGUGGaGUUGCGCGCg--CAa-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 9796 0.73 0.288108
Target:  5'- gGGGCGCCUCGcCGCGUGCGgcauaGCCu- -3'
miRNA:   3'- -CUUGUGGAGUuGCGCGCGCaa---CGGca -5'
24296 3' -55.4 NC_005263.2 + 10107 0.67 0.592082
Target:  5'- cGGCACCaaUCGugGCGaguuCGUUGCCGc -3'
miRNA:   3'- cUUGUGG--AGUugCGCgc--GCAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 10136 0.66 0.636623
Target:  5'- --cCACCuUCAGCGCcagccgGCGCGgcaucgGCCGg -3'
miRNA:   3'- cuuGUGG-AGUUGCG------CGCGCaa----CGGCa -5'
24296 3' -55.4 NC_005263.2 + 10295 0.66 0.658908
Target:  5'- uGAGCGCCg-GAUGCGCGCcc-GUCGUc -3'
miRNA:   3'- -CUUGUGGagUUGCGCGCGcaaCGGCA- -5'
24296 3' -55.4 NC_005263.2 + 10658 0.66 0.647773
Target:  5'- uGGACGCCgcgCAGacCGCGCGC---GCCGa -3'
miRNA:   3'- -CUUGUGGa--GUU--GCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 11959 0.67 0.614321
Target:  5'- --uCGCCUCGA-GCGCGC---GCCGUa -3'
miRNA:   3'- cuuGUGGAGUUgCGCGCGcaaCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.