miRNA display CGI


Results 1 - 20 of 89 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 28696 1.08 0.000919
Target:  5'- cGAACACCUCAACGCGCGCGUUGCCGUa -3'
miRNA:   3'- -CUUGUGGAGUUGCGCGCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 670 0.81 0.08079
Target:  5'- cGAACGCCUCAucguaGCGCGCcUUGCCGa -3'
miRNA:   3'- -CUUGUGGAGUug---CGCGCGcAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 3722 0.77 0.15138
Target:  5'- uGAGCGCCUCGcgcACGCcgggccggaucaGCGCGUacgUGCCGUa -3'
miRNA:   3'- -CUUGUGGAGU---UGCG------------CGCGCA---ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 44655 0.76 0.18877
Target:  5'- -uGCGCCUCGAUGCGuCGCGcgcGCCGa -3'
miRNA:   3'- cuUGUGGAGUUGCGC-GCGCaa-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 41477 0.75 0.199311
Target:  5'- -cGCugCUCGACGCGgGCGagucgGCCGUc -3'
miRNA:   3'- cuUGugGAGUUGCGCgCGCaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 31240 0.74 0.25325
Target:  5'- gGGGCGCUUCGguuccGCGCgGCGCGgcGCCGg -3'
miRNA:   3'- -CUUGUGGAGU-----UGCG-CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 27635 0.74 0.25325
Target:  5'- --uUACCUCGACG-G-GCGUUGCCGUa -3'
miRNA:   3'- cuuGUGGAGUUGCgCgCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 37222 0.74 0.259933
Target:  5'- -uACGCCgcucaCGACGCGCGCcggUGCCGa -3'
miRNA:   3'- cuUGUGGa----GUUGCGCGCGca-ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 9796 0.73 0.288108
Target:  5'- gGGGCGCCUCGcCGCGUGCGgcauaGCCu- -3'
miRNA:   3'- -CUUGUGGAGUuGCGCGCGCaa---CGGca -5'
24296 3' -55.4 NC_005263.2 + 32534 0.73 0.298521
Target:  5'- -cGCGCUaccgucauucggcguUCAGCGCGCGCGUcugcGCCGa -3'
miRNA:   3'- cuUGUGG---------------AGUUGCGCGCGCAa---CGGCa -5'
24296 3' -55.4 NC_005263.2 + 15550 0.72 0.303073
Target:  5'- ---aACCUCGGCGaguaaGCGCGUgGCCGg -3'
miRNA:   3'- cuugUGGAGUUGCg----CGCGCAaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 33425 0.72 0.310777
Target:  5'- uGAGCGCC---GCGCGCGCGUaGCgGUc -3'
miRNA:   3'- -CUUGUGGaguUGCGCGCGCAaCGgCA- -5'
24296 3' -55.4 NC_005263.2 + 25417 0.72 0.334777
Target:  5'- aGACAgccauCCUCGGCGCGUGCGgUGCgGg -3'
miRNA:   3'- cUUGU-----GGAGUUGCGCGCGCaACGgCa -5'
24296 3' -55.4 NC_005263.2 + 45796 0.72 0.334777
Target:  5'- --cCGCCaguUCAACGCGgGCG-UGCCGg -3'
miRNA:   3'- cuuGUGG---AGUUGCGCgCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 22325 0.72 0.343073
Target:  5'- cGGCACgCUCAGCGCGCGgGcUGCUu- -3'
miRNA:   3'- cUUGUG-GAGUUGCGCGCgCaACGGca -5'
24296 3' -55.4 NC_005263.2 + 37440 0.72 0.343073
Target:  5'- -cAUACgUCGGCGCGCGCGgucUGCgCGg -3'
miRNA:   3'- cuUGUGgAGUUGCGCGCGCa--ACG-GCa -5'
24296 3' -55.4 NC_005263.2 + 16342 0.71 0.36884
Target:  5'- aAACGCUUCGACGagacgaaGCGCGcgGCCGc -3'
miRNA:   3'- cUUGUGGAGUUGCg------CGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 42465 0.71 0.377718
Target:  5'- aGAAaACCgguaacggCAugGUGCGCGUUGCCu- -3'
miRNA:   3'- -CUUgUGGa-------GUugCGCGCGCAACGGca -5'
24296 3' -55.4 NC_005263.2 + 44749 0.71 0.38674
Target:  5'- -cGCACugucuggucgCUCGAcCGCGCGCGgcGCCGg -3'
miRNA:   3'- cuUGUG----------GAGUU-GCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 29201 0.71 0.38674
Target:  5'- --uCACgCUCGACGCaggccgGCGCGUauuUGCCGUc -3'
miRNA:   3'- cuuGUG-GAGUUGCG------CGCGCA---ACGGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.