miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 28696 1.08 0.000919
Target:  5'- cGAACACCUCAACGCGCGCGUUGCCGUa -3'
miRNA:   3'- -CUUGUGGAGUUGCGCGCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 23016 0.69 0.473961
Target:  5'- aGGACACC-CGGCGUGCcaGCGccacccgaaUUGCCGg -3'
miRNA:   3'- -CUUGUGGaGUUGCGCG--CGC---------AACGGCa -5'
24296 3' -55.4 NC_005263.2 + 29036 0.69 0.484262
Target:  5'- aGACGCaC-CAGCGCGCGCag-GCCGc -3'
miRNA:   3'- cUUGUG-GaGUUGCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 22017 0.66 0.68109
Target:  5'- cGAGCAgCUCGACGCGCucuauGCGcacgUGCg-- -3'
miRNA:   3'- -CUUGUgGAGUUGCGCG-----CGCa---ACGgca -5'
24296 3' -55.4 NC_005263.2 + 27635 0.74 0.25325
Target:  5'- --uUACCUCGACG-G-GCGUUGCCGUa -3'
miRNA:   3'- cuuGUGGAGUUGCgCgCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 37222 0.74 0.259933
Target:  5'- -uACGCCgcucaCGACGCGCGCcggUGCCGa -3'
miRNA:   3'- cuUGUGGa----GUUGCGCGCGca-ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 33425 0.72 0.310777
Target:  5'- uGAGCGCC---GCGCGCGCGUaGCgGUc -3'
miRNA:   3'- -CUUGUGGaguUGCGCGCGCAaCGgCA- -5'
24296 3' -55.4 NC_005263.2 + 22325 0.72 0.343073
Target:  5'- cGGCACgCUCAGCGCGCGgGcUGCUu- -3'
miRNA:   3'- cUUGUG-GAGUUGCGCGCgCaACGGca -5'
24296 3' -55.4 NC_005263.2 + 44749 0.71 0.38674
Target:  5'- -cGCACugucuggucgCUCGAcCGCGCGCGgcGCCGg -3'
miRNA:   3'- cuUGUG----------GAGUU-GCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 30322 0.69 0.472937
Target:  5'- -uGCGCCUCGaaaauuuGCGagaaGCGCG-UGCCGa -3'
miRNA:   3'- cuUGUGGAGU-------UGCg---CGCGCaACGGCa -5'
24296 3' -55.4 NC_005263.2 + 33831 0.7 0.443744
Target:  5'- -cGCuuauCC-CAAUGCGCGCGUUgcGCCGg -3'
miRNA:   3'- cuUGu---GGaGUUGCGCGCGCAA--CGGCa -5'
24296 3' -55.4 NC_005263.2 + 29201 0.71 0.38674
Target:  5'- --uCACgCUCGACGCaggccgGCGCGUauuUGCCGUc -3'
miRNA:   3'- cuuGUG-GAGUUGCG------CGCGCA---ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 3722 0.77 0.15138
Target:  5'- uGAGCGCCUCGcgcACGCcgggccggaucaGCGCGUacgUGCCGUa -3'
miRNA:   3'- -CUUGUGGAGU---UGCG------------CGCGCA---ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 44388 0.69 0.463772
Target:  5'- uGGACAUgcguaUCAACGCGCGCGgcaUUGgCGUc -3'
miRNA:   3'- -CUUGUGg----AGUUGCGCGCGC---AACgGCA- -5'
24296 3' -55.4 NC_005263.2 + 44655 0.76 0.18877
Target:  5'- -uGCGCCUCGAUGCGuCGCGcgcGCCGa -3'
miRNA:   3'- cuUGUGGAGUUGCGC-GCGCaa-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 37440 0.72 0.343073
Target:  5'- -cAUACgUCGGCGCGCGCGgucUGCgCGg -3'
miRNA:   3'- cuUGUGgAGUUGCGCGCGCa--ACG-GCa -5'
24296 3' -55.4 NC_005263.2 + 6173 0.69 0.472937
Target:  5'- -uGCGCCUUgAGCgGCGCGCGUUucgcauucaggaaGCCGg -3'
miRNA:   3'- cuUGUGGAG-UUG-CGCGCGCAA-------------CGGCa -5'
24296 3' -55.4 NC_005263.2 + 45458 0.69 0.484262
Target:  5'- -uGCACCUCGAgccCG-GCGCGaacgUGCCGa -3'
miRNA:   3'- cuUGUGGAGUU---GCgCGCGCa---ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 41477 0.75 0.199311
Target:  5'- -cGCugCUCGACGCGgGCGagucgGCCGUc -3'
miRNA:   3'- cuUGugGAGUUGCGCgCGCaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 9796 0.73 0.288108
Target:  5'- gGGGCGCCUCGcCGCGUGCGgcauaGCCu- -3'
miRNA:   3'- -CUUGUGGAGUuGCGCGCGCaa---CGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.