miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24296 3' -55.4 NC_005263.2 + 12510 0.68 0.54809
Target:  5'- -cGCGCCggCuuCGCGCGgGUUGgCGUu -3'
miRNA:   3'- cuUGUGGa-GuuGCGCGCgCAACgGCA- -5'
24296 3' -55.4 NC_005263.2 + 29036 0.69 0.484262
Target:  5'- aGACGCaC-CAGCGCGCGCag-GCCGc -3'
miRNA:   3'- cUUGUG-GaGUUGCGCGCGcaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 29201 0.71 0.38674
Target:  5'- --uCACgCUCGACGCaggccgGCGCGUauuUGCCGUc -3'
miRNA:   3'- cuuGUG-GAGUUGCG------CGCGCA---ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 41477 0.75 0.199311
Target:  5'- -cGCugCUCGACGCGgGCGagucgGCCGUc -3'
miRNA:   3'- cuUGugGAGUUGCGCgCGCaa---CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 20969 0.66 0.625469
Target:  5'- cGGACAUCgcCGACGCggcugcgcgccuGCGCGUcgacgUGCCGg -3'
miRNA:   3'- -CUUGUGGa-GUUGCG------------CGCGCA-----ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 10107 0.67 0.592082
Target:  5'- cGGCACCaaUCGugGCGaguuCGUUGCCGc -3'
miRNA:   3'- cUUGUGG--AGUugCGCgc--GCAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 23016 0.69 0.473961
Target:  5'- aGGACACC-CGGCGUGCcaGCGccacccgaaUUGCCGg -3'
miRNA:   3'- -CUUGUGGaGUUGCGCG--CGC---------AACGGCa -5'
24296 3' -55.4 NC_005263.2 + 44655 0.76 0.18877
Target:  5'- -uGCGCCUCGAUGCGuCGCGcgcGCCGa -3'
miRNA:   3'- cuUGUGGAGUUGCGC-GCGCaa-CGGCa -5'
24296 3' -55.4 NC_005263.2 + 27105 0.67 0.579906
Target:  5'- uGGCGCUUCGACGgGCGCGgcGaauugcaccgaacCCGUa -3'
miRNA:   3'- cUUGUGGAGUUGCgCGCGCaaC-------------GGCA- -5'
24296 3' -55.4 NC_005263.2 + 3722 0.77 0.15138
Target:  5'- uGAGCGCCUCGcgcACGCcgggccggaucaGCGCGUacgUGCCGUa -3'
miRNA:   3'- -CUUGUGGAGU---UGCG------------CGCGCA---ACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 45458 0.69 0.484262
Target:  5'- -uGCACCUCGAgccCG-GCGCGaacgUGCCGa -3'
miRNA:   3'- cuUGUGGAGUU---GCgCGCGCa---ACGGCa -5'
24296 3' -55.4 NC_005263.2 + 21296 0.68 0.557912
Target:  5'- uGGGCGCCaacuacgCGACGUGCGgGUUcacgaacGCCGUc -3'
miRNA:   3'- -CUUGUGGa------GUUGCGCGCgCAA-------CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 44388 0.69 0.463772
Target:  5'- uGGACAUgcguaUCAACGCGCGCGgcaUUGgCGUc -3'
miRNA:   3'- -CUUGUGg----AGUUGCGCGCGC---AACgGCA- -5'
24296 3' -55.4 NC_005263.2 + 44749 0.71 0.38674
Target:  5'- -cGCACugucuggucgCUCGAcCGCGCGCGgcGCCGg -3'
miRNA:   3'- cuUGUG----------GAGUU-GCGCGCGCaaCGGCa -5'
24296 3' -55.4 NC_005263.2 + 33425 0.72 0.310777
Target:  5'- uGAGCGCC---GCGCGCGCGUaGCgGUc -3'
miRNA:   3'- -CUUGUGGaguUGCGCGCGCAaCGgCA- -5'
24296 3' -55.4 NC_005263.2 + 27635 0.74 0.25325
Target:  5'- --uUACCUCGACG-G-GCGUUGCCGUa -3'
miRNA:   3'- cuuGUGGAGUUGCgCgCGCAACGGCA- -5'
24296 3' -55.4 NC_005263.2 + 2263 0.66 0.647773
Target:  5'- --gUugUUCgAGCGCaGCGCGUUcGCCGUc -3'
miRNA:   3'- cuuGugGAG-UUGCG-CGCGCAA-CGGCA- -5'
24296 3' -55.4 NC_005263.2 + 25892 0.66 0.633277
Target:  5'- cGACGCCggCGAcggcCGCGacguacguaacgguCGCGUUGCCGg -3'
miRNA:   3'- cUUGUGGa-GUU----GCGC--------------GCGCAACGGCa -5'
24296 3' -55.4 NC_005263.2 + 21185 0.67 0.614321
Target:  5'- cGGACGCg--GACGCGCGCGgcGCgGg -3'
miRNA:   3'- -CUUGUGgagUUGCGCGCGCaaCGgCa -5'
24296 3' -55.4 NC_005263.2 + 26499 0.67 0.614321
Target:  5'- -uGCGCCUUGAuguaacuguUGCGCGCGgcGUCGa -3'
miRNA:   3'- cuUGUGGAGUU---------GCGCGCGCaaCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.