miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24304 3' -53.6 NC_005263.2 + 2019 0.66 0.753257
Target:  5'- aAUCCGcAgcGGCgCAUAAcGGCGCCCg -3'
miRNA:   3'- gUAGGC-UuuCUGgGUGUU-CUGCGGGa -5'
24304 3' -53.6 NC_005263.2 + 34877 0.66 0.731864
Target:  5'- gCAUCuUGAuGGACCuCGCGcAGGCGCUCa -3'
miRNA:   3'- -GUAG-GCUuUCUGG-GUGU-UCUGCGGGa -5'
24304 3' -53.6 NC_005263.2 + 4153 0.66 0.731864
Target:  5'- uGUCCGAcuu-CCCACAAGucCGCCg- -3'
miRNA:   3'- gUAGGCUuucuGGGUGUUCu-GCGGga -5'
24304 3' -53.6 NC_005263.2 + 38296 0.67 0.718821
Target:  5'- aAUCCGcacGAAGGCUaugccgcacgcgGCGAGGCGCCCc -3'
miRNA:   3'- gUAGGC---UUUCUGGg-----------UGUUCUGCGGGa -5'
24304 3' -53.6 NC_005263.2 + 29018 0.67 0.710052
Target:  5'- aCAUCgGccAGcCCUGCAAGACGCaCCa -3'
miRNA:   3'- -GUAGgCuuUCuGGGUGUUCUGCG-GGa -5'
24304 3' -53.6 NC_005263.2 + 21865 0.67 0.69902
Target:  5'- gCGUUCGcGAcGGCCgGCAAGACGCUa- -3'
miRNA:   3'- -GUAGGCuUU-CUGGgUGUUCUGCGGga -5'
24304 3' -53.6 NC_005263.2 + 30489 0.67 0.69902
Target:  5'- --aUCGAugcgcGACCCGCGccacuggaAGAUGCCCUg -3'
miRNA:   3'- guaGGCUuu---CUGGGUGU--------UCUGCGGGA- -5'
24304 3' -53.6 NC_005263.2 + 5716 0.68 0.665562
Target:  5'- aAUUCGGGgcGGACCUugAAGgguACGCCCc -3'
miRNA:   3'- gUAGGCUU--UCUGGGugUUC---UGCGGGa -5'
24304 3' -53.6 NC_005263.2 + 44484 0.68 0.654328
Target:  5'- --gUCGAuugcuacGGCCCGC-AGGCGCCCg -3'
miRNA:   3'- guaGGCUuu-----CUGGGUGuUCUGCGGGa -5'
24304 3' -53.6 NC_005263.2 + 43436 0.68 0.631808
Target:  5'- gAUCCugacGAAAGACCCGCGcgccGGCcuGCCCg -3'
miRNA:   3'- gUAGG----CUUUCUGGGUGUu---CUG--CGGGa -5'
24304 3' -53.6 NC_005263.2 + 44987 0.68 0.620543
Target:  5'- uGUCCGGgaucGAGGCgCGCAuGGCGCCg- -3'
miRNA:   3'- gUAGGCU----UUCUGgGUGUuCUGCGGga -5'
24304 3' -53.6 NC_005263.2 + 21063 0.69 0.609288
Target:  5'- aUAUCCacGAcGAUCCACAAGGCGgCCa -3'
miRNA:   3'- -GUAGGcuUU-CUGGGUGUUCUGCgGGa -5'
24304 3' -53.6 NC_005263.2 + 4723 0.69 0.564572
Target:  5'- uCGUCCGGGuacgucgcGCCCGCGAGcACGCCa- -3'
miRNA:   3'- -GUAGGCUUuc------UGGGUGUUC-UGCGGga -5'
24304 3' -53.6 NC_005263.2 + 36537 0.72 0.437698
Target:  5'- --cCUGAAAGGCCUGCAAGACaaGCUCg -3'
miRNA:   3'- guaGGCUUUCUGGGUGUUCUG--CGGGa -5'
24304 3' -53.6 NC_005263.2 + 16864 0.72 0.418131
Target:  5'- aCGUCCGAgGAGAaCCGCcAGGCGCUCg -3'
miRNA:   3'- -GUAGGCU-UUCUgGGUGuUCUGCGGGa -5'
24304 3' -53.6 NC_005263.2 + 44712 0.74 0.327957
Target:  5'- --aCCGAAGuGCCCGCAAcgacggcGACGCCCg -3'
miRNA:   3'- guaGGCUUUcUGGGUGUU-------CUGCGGGa -5'
24304 3' -53.6 NC_005263.2 + 42803 0.75 0.288943
Target:  5'- ---gCGAAAGACCCgaacgccgaguaaGCGAGACGCCUg -3'
miRNA:   3'- guagGCUUUCUGGG-------------UGUUCUGCGGGa -5'
24304 3' -53.6 NC_005263.2 + 33587 1.07 0.001708
Target:  5'- gCAUCCGAAAGACCCACAAGACGCCCUu -3'
miRNA:   3'- -GUAGGCUUUCUGGGUGUUCUGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.