Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 25890 | 0.68 | 0.89292 |
Target: 5'- gCCGAC--GCcgGcGACG-GCCGCGACg -3' miRNA: 3'- -GGUUGuuCGuaCuCUGCuUGGUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 26523 | 0.66 | 0.961581 |
Target: 5'- gCGGCGucgacGCcgGcGGCGAGCaCGCGGCg -3' miRNA: 3'- gGUUGUu----CGuaCuCUGCUUG-GUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 26703 | 0.69 | 0.869047 |
Target: 5'- gCCcGCAAGCA--GGACGAGCUccgugugcauGCGAUg -3' miRNA: 3'- -GGuUGUUCGUacUCUGCUUGG----------UGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 27278 | 0.7 | 0.823945 |
Target: 5'- cCCGACu-GCGcGAGGcCGAGCCGCGcCu -3' miRNA: 3'- -GGUUGuuCGUaCUCU-GCUUGGUGCuG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 27546 | 0.75 | 0.524167 |
Target: 5'- gCCGGCAGGCcgGGcACGAGCguCGCGGCg -3' miRNA: 3'- -GGUUGUUCGuaCUcUGCUUG--GUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 28044 | 0.66 | 0.957499 |
Target: 5'- uUCGGCucGAGCGUGugcuGaACGAccGCCGCGAUc -3' miRNA: 3'- -GGUUG--UUCGUACu---C-UGCU--UGGUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 29008 | 0.7 | 0.794126 |
Target: 5'- gCCGACcGGCAgugcGuuGCGcACCGCGACg -3' miRNA: 3'- -GGUUGuUCGUa---CucUGCuUGGUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 29630 | 0.66 | 0.961581 |
Target: 5'- aCGguACGAGCAUGAugccGGCGAGgUugaACGACa -3' miRNA: 3'- gGU--UGUUCGUACU----CUGCUUgG---UGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 30902 | 0.67 | 0.938253 |
Target: 5'- gCAGCGuGCAcGAGuCGAgcGCgGCGACg -3' miRNA: 3'- gGUUGUuCGUaCUCuGCU--UGgUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 32697 | 0.68 | 0.89292 |
Target: 5'- gUCAGCAGGUcgGucACGAGCgcaugCACGGCg -3' miRNA: 3'- -GGUUGUUCGuaCucUGCUUG-----GUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 33965 | 0.77 | 0.428514 |
Target: 5'- gCCGGCGAGUGUGcGGCGAAUCguaGCGGCg -3' miRNA: 3'- -GGUUGUUCGUACuCUGCUUGG---UGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 34777 | 0.67 | 0.938253 |
Target: 5'- gCCGGCAucAGCAUGAcGC-AGCuCGCGAUg -3' miRNA: 3'- -GGUUGU--UCGUACUcUGcUUG-GUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 35421 | 0.74 | 0.592218 |
Target: 5'- gCCGGCAAGCucGAcGCGAACgACGACc -3' miRNA: 3'- -GGUUGUUCGuaCUcUGCUUGgUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 35538 | 0.66 | 0.961581 |
Target: 5'- cCCGGCGGcGCGc-GGGCGGgcGCUACGGCg -3' miRNA: 3'- -GGUUGUU-CGUacUCUGCU--UGGUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 36569 | 0.75 | 0.569284 |
Target: 5'- gCGGCAAG-GUGAcGACGAACCGCGcCg -3' miRNA: 3'- gGUUGUUCgUACU-CUGCUUGGUGCuG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 37644 | 0.73 | 0.638445 |
Target: 5'- aCCuGCuuGUAUGGGACGGGCaCGCGAUc -3' miRNA: 3'- -GGuUGuuCGUACUCUGCUUG-GUGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 37841 | 0.68 | 0.914168 |
Target: 5'- gCCGACGcGGCGUuucGCGAACCGCGuGCg -3' miRNA: 3'- -GGUUGU-UCGUAcucUGCUUGGUGC-UG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 37921 | 0.68 | 0.900301 |
Target: 5'- aCAGCGGGCGc-AGGCGcGCCGcCGGCa -3' miRNA: 3'- gGUUGUUCGUacUCUGCuUGGU-GCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 38113 | 0.67 | 0.920648 |
Target: 5'- cCUGGCGcGCAaGAcGGCGAACCggACGGCg -3' miRNA: 3'- -GGUUGUuCGUaCU-CUGCUUGG--UGCUG- -5' |
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24312 | 3' | -48.9 | NC_005263.2 | + | 38776 | 0.68 | 0.914168 |
Target: 5'- aCGAUccGCAUGAcGAUGGaagcgGCCACGAg -3' miRNA: 3'- gGUUGuuCGUACU-CUGCU-----UGGUGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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