miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24312 3' -48.9 NC_005263.2 + 228 0.68 0.914168
Target:  5'- -aGAUAuGCGUGGGAuCGccCCACGGCg -3'
miRNA:   3'- ggUUGUuCGUACUCU-GCuuGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 2392 0.72 0.695987
Target:  5'- gCGGCAGGCcgGGGcaccACGcuucGCCGCGACa -3'
miRNA:   3'- gGUUGUUCGuaCUC----UGCu---UGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 3083 0.68 0.89292
Target:  5'- gCuuCGAGCuucGGGacaucauucGCGAGCCACGGCg -3'
miRNA:   3'- gGuuGUUCGua-CUC---------UGCUUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 7265 0.71 0.762625
Target:  5'- gUCAACGAuGUcgGUcGGGACGAGCgGCGGCa -3'
miRNA:   3'- -GGUUGUU-CG--UA-CUCUGCUUGgUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 8222 0.66 0.94847
Target:  5'- uUCGAC-AGCcgGcGACcccGACCACGGCg -3'
miRNA:   3'- -GGUUGuUCGuaCuCUGc--UUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 9454 0.68 0.89292
Target:  5'- -uGGCGAGguUGGcGuCGAugCGCGACg -3'
miRNA:   3'- ggUUGUUCguACU-CuGCUugGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 10681 0.66 0.953131
Target:  5'- gCCGAC--GUAUGAcGACGAggacgGCCgcGCGACg -3'
miRNA:   3'- -GGUUGuuCGUACU-CUGCU-----UGG--UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 11076 0.76 0.502116
Target:  5'- aCGGCAaaAGCGUGGGAUGAcGCCGCG-Cg -3'
miRNA:   3'- gGUUGU--UCGUACUCUGCU-UGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 15192 0.66 0.953131
Target:  5'- aUCGAgAAGCcgGucaGCGGGCCGcCGACg -3'
miRNA:   3'- -GGUUgUUCGuaCuc-UGCUUGGU-GCUG- -5'
24312 3' -48.9 NC_005263.2 + 15310 0.67 0.934952
Target:  5'- gUCAGCGAGCugcgcGAGGCgcgggccgacaccgaGAACCcCGACg -3'
miRNA:   3'- -GGUUGUUCGua---CUCUG---------------CUUGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 16958 0.76 0.513093
Target:  5'- gCCGACAcGCA--AGGCGuACCGCGACu -3'
miRNA:   3'- -GGUUGUuCGUacUCUGCuUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 17718 0.66 0.957499
Target:  5'- cCCGACGAGCGccgccgcaUGGGGCucGCacuCGGCg -3'
miRNA:   3'- -GGUUGUUCGU--------ACUCUGcuUGgu-GCUG- -5'
24312 3' -48.9 NC_005263.2 + 19177 0.72 0.695987
Target:  5'- gCCGugGCGAGCGaacugaUGGGACGGAUCagcGCGGCg -3'
miRNA:   3'- -GGU--UGUUCGU------ACUCUGCUUGG---UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 21090 0.7 0.833455
Target:  5'- aCGACAcaaGGUGUGGgcggcGACGAGCC-CGGCg -3'
miRNA:   3'- gGUUGU---UCGUACU-----CUGCUUGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 22092 0.68 0.914168
Target:  5'- aCCGGCAcaccaGGCGUGAcGGCu-GCCGcCGGCa -3'
miRNA:   3'- -GGUUGU-----UCGUACU-CUGcuUGGU-GCUG- -5'
24312 3' -48.9 NC_005263.2 + 22093 0.66 0.961581
Target:  5'- cUCGACAAGcCAUucGGCGAaguGCCGCG-Cg -3'
miRNA:   3'- -GGUUGUUC-GUAcuCUGCU---UGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 22590 0.73 0.650015
Target:  5'- gCCaAGCcAGCccGAGACGccGACCAUGACg -3'
miRNA:   3'- -GG-UUGuUCGuaCUCUGC--UUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 23325 0.66 0.956219
Target:  5'- cCCGGCGAGCcgccgacgccgcccGUGAG-CGAcaguagcagGCC-CGACa -3'
miRNA:   3'- -GGUUGUUCG--------------UACUCuGCU---------UGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 23886 0.72 0.718615
Target:  5'- aCGACAAGCGUGAGcgcgcucgugaGCGcgcCCGCGAg -3'
miRNA:   3'- gGUUGUUCGUACUC-----------UGCuu-GGUGCUg -5'
24312 3' -48.9 NC_005263.2 + 25047 0.67 0.943512
Target:  5'- gCGGCAGGCAacacGACGAuCC-CGACg -3'
miRNA:   3'- gGUUGUUCGUacu-CUGCUuGGuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.