miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24312 3' -48.9 NC_005263.2 + 38958 1.14 0.002064
Target:  5'- gCCAACAAGCAUGAGACGAACCACGACg -3'
miRNA:   3'- -GGUUGUUCGUACUCUGCUUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 33965 0.77 0.428514
Target:  5'- gCCGGCGAGUGUGcGGCGAAUCguaGCGGCg -3'
miRNA:   3'- -GGUUGUUCGUACuCUGCUUGG---UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 11076 0.76 0.502116
Target:  5'- aCGGCAaaAGCGUGGGAUGAcGCCGCG-Cg -3'
miRNA:   3'- gGUUGU--UCGUACUCUGCU-UGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 16958 0.76 0.513093
Target:  5'- gCCGACAcGCA--AGGCGuACCGCGACu -3'
miRNA:   3'- -GGUUGUuCGUacUCUGCuUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 27546 0.75 0.524167
Target:  5'- gCCGGCAGGCcgGGcACGAGCguCGCGGCg -3'
miRNA:   3'- -GGUUGUUCGuaCUcUGCUUG--GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 36569 0.75 0.569284
Target:  5'- gCGGCAAG-GUGAcGACGAACCGCGcCg -3'
miRNA:   3'- gGUUGUUCgUACU-CUGCUUGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 35421 0.74 0.592218
Target:  5'- gCCGGCAAGCucGAcGCGAACgACGACc -3'
miRNA:   3'- -GGUUGUUCGuaCUcUGCUUGgUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 45472 0.74 0.603745
Target:  5'- gCCGGCAAGCGc--GAUGAACCGCG-Cg -3'
miRNA:   3'- -GGUUGUUCGUacuCUGCUUGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 37644 0.73 0.638445
Target:  5'- aCCuGCuuGUAUGGGACGGGCaCGCGAUc -3'
miRNA:   3'- -GGuUGuuCGUACUCUGCUUG-GUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 22590 0.73 0.650015
Target:  5'- gCCaAGCcAGCccGAGACGccGACCAUGACg -3'
miRNA:   3'- -GG-UUGuUCGuaCUCUGC--UUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 40448 0.73 0.677684
Target:  5'- aCAGCGGGCGUGuGcgcgaugcguuuauuGCGAaagGCCAUGACg -3'
miRNA:   3'- gGUUGUUCGUACuC---------------UGCU---UGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 2392 0.72 0.695987
Target:  5'- gCGGCAGGCcgGGGcaccACGcuucGCCGCGACa -3'
miRNA:   3'- gGUUGUUCGuaCUC----UGCu---UGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 19177 0.72 0.695987
Target:  5'- gCCGugGCGAGCGaacugaUGGGACGGAUCagcGCGGCg -3'
miRNA:   3'- -GGU--UGUUCGU------ACUCUGCUUGG---UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 23886 0.72 0.718615
Target:  5'- aCGACAAGCGUGAGcgcgcucgugaGCGcgcCCGCGAg -3'
miRNA:   3'- gGUUGUUCGUACUC-----------UGCuu-GGUGCUg -5'
24312 3' -48.9 NC_005263.2 + 7265 0.71 0.762625
Target:  5'- gUCAACGAuGUcgGUcGGGACGAGCgGCGGCa -3'
miRNA:   3'- -GGUUGUU-CG--UA-CUCUGCUUGgUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 40017 0.71 0.773291
Target:  5'- uCCGAUcuGAGCA--AGACGAACCaauACGGCc -3'
miRNA:   3'- -GGUUG--UUCGUacUCUGCUUGG---UGCUG- -5'
24312 3' -48.9 NC_005263.2 + 29008 0.7 0.794126
Target:  5'- gCCGACcGGCAgugcGuuGCGcACCGCGACg -3'
miRNA:   3'- -GGUUGuUCGUa---CucUGCuUGGUGCUG- -5'
24312 3' -48.9 NC_005263.2 + 27278 0.7 0.823945
Target:  5'- cCCGACu-GCGcGAGGcCGAGCCGCGcCu -3'
miRNA:   3'- -GGUUGuuCGUaCUCU-GCUUGGUGCuG- -5'
24312 3' -48.9 NC_005263.2 + 21090 0.7 0.833455
Target:  5'- aCGACAcaaGGUGUGGgcggcGACGAGCC-CGGCg -3'
miRNA:   3'- gGUUGU---UCGUACU-----CUGCUUGGuGCUG- -5'
24312 3' -48.9 NC_005263.2 + 26703 0.69 0.869047
Target:  5'- gCCcGCAAGCA--GGACGAGCUccgugugcauGCGAUg -3'
miRNA:   3'- -GGuUGUUCGUacUCUGCUUGG----------UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.