Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 38958 | 1.14 | 0.002064 |
Target: 5'- gCCAACAAGCAUGAGACGAACCACGACg -3' miRNA: 3'- -GGUUGUUCGUACUCUGCUUGGUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 8222 | 0.66 | 0.94847 |
Target: 5'- uUCGAC-AGCcgGcGACcccGACCACGGCg -3' miRNA: 3'- -GGUUGuUCGuaCuCUGc--UUGGUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 15192 | 0.66 | 0.953131 |
Target: 5'- aUCGAgAAGCcgGucaGCGGGCCGcCGACg -3' miRNA: 3'- -GGUUgUUCGuaCuc-UGCUUGGU-GCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 26523 | 0.66 | 0.961581 |
Target: 5'- gCGGCGucgacGCcgGcGGCGAGCaCGCGGCg -3' miRNA: 3'- gGUUGUu----CGuaCuCUGCUUG-GUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 22590 | 0.73 | 0.650015 |
Target: 5'- gCCaAGCcAGCccGAGACGccGACCAUGACg -3' miRNA: 3'- -GG-UUGuUCGuaCUCUGC--UUGGUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 23886 | 0.72 | 0.718615 |
Target: 5'- aCGACAAGCGUGAGcgcgcucgugaGCGcgcCCGCGAg -3' miRNA: 3'- gGUUGUUCGUACUC-----------UGCuu-GGUGCUg -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 21090 | 0.7 | 0.833455 |
Target: 5'- aCGACAcaaGGUGUGGgcggcGACGAGCC-CGGCg -3' miRNA: 3'- gGUUGU---UCGUACU-----CUGCUUGGuGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 26703 | 0.69 | 0.869047 |
Target: 5'- gCCcGCAAGCA--GGACGAGCUccgugugcauGCGAUg -3' miRNA: 3'- -GGuUGUUCGUacUCUGCUUGG----------UGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 9454 | 0.68 | 0.89292 |
Target: 5'- -uGGCGAGguUGGcGuCGAugCGCGACg -3' miRNA: 3'- ggUUGUUCguACU-CuGCUugGUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 228 | 0.68 | 0.914168 |
Target: 5'- -aGAUAuGCGUGGGAuCGccCCACGGCg -3' miRNA: 3'- ggUUGUuCGUACUCU-GCuuGGUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 39881 | 0.68 | 0.89292 |
Target: 5'- uCCAGgAAGUGUucaAGACGAACCccAUGACg -3' miRNA: 3'- -GGUUgUUCGUAc--UCUGCUUGG--UGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 47939 | 0.68 | 0.885247 |
Target: 5'- gCGAgAAGCGUGGGAgGGGauugugagugaCACGACg -3' miRNA: 3'- gGUUgUUCGUACUCUgCUUg----------GUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 33965 | 0.77 | 0.428514 |
Target: 5'- gCCGGCGAGUGUGcGGCGAAUCguaGCGGCg -3' miRNA: 3'- -GGUUGUUCGUACuCUGCUUGG---UGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 25890 | 0.68 | 0.89292 |
Target: 5'- gCCGAC--GCcgGcGACG-GCCGCGACg -3' miRNA: 3'- -GGUUGuuCGuaCuCUGCuUGGUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 11076 | 0.76 | 0.502116 |
Target: 5'- aCGGCAaaAGCGUGGGAUGAcGCCGCG-Cg -3' miRNA: 3'- gGUUGU--UCGUACUCUGCU-UGGUGCuG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 45184 | 0.69 | 0.877287 |
Target: 5'- gCAuucGCGAGCAUGGcGGCcAACUAUGGCg -3' miRNA: 3'- gGU---UGUUCGUACU-CUGcUUGGUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 38776 | 0.68 | 0.914168 |
Target: 5'- aCGAUccGCAUGAcGAUGGaagcgGCCACGAg -3' miRNA: 3'- gGUUGuuCGUACU-CUGCU-----UGGUGCUg -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 43403 | 0.66 | 0.94847 |
Target: 5'- aCCAAgAAGCAcGAcGACaGAUCGCGAa -3' miRNA: 3'- -GGUUgUUCGUaCU-CUGcUUGGUGCUg -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 16958 | 0.76 | 0.513093 |
Target: 5'- gCCGACAcGCA--AGGCGuACCGCGACu -3' miRNA: 3'- -GGUUGUuCGUacUCUGCuUGGUGCUG- -5' |
|||||||
24312 | 3' | -48.9 | NC_005263.2 | + | 7265 | 0.71 | 0.762625 |
Target: 5'- gUCAACGAuGUcgGUcGGGACGAGCgGCGGCa -3' miRNA: 3'- -GGUUGUU-CG--UA-CUCUGCUUGgUGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home