miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24313 3' -56.1 NC_005263.2 + 19866 0.7 0.407709
Target:  5'- -gGUGCGCGACucgcaGGUAUCGauGUuUGCCGa -3'
miRNA:   3'- ugUACGCGCUG-----CCGUAGC--CAuACGGC- -5'
24313 3' -56.1 NC_005263.2 + 20133 0.71 0.345812
Target:  5'- gGCAaGCGCGACGGUA-CGGccgucgcGCCGg -3'
miRNA:   3'- -UGUaCGCGCUGCCGUaGCCaua----CGGC- -5'
24313 3' -56.1 NC_005263.2 + 22374 0.76 0.16713
Target:  5'- aGCGUGuCGauCGGCGGCAUCGGgcagGCCGc -3'
miRNA:   3'- -UGUAC-GC--GCUGCCGUAGCCaua-CGGC- -5'
24313 3' -56.1 NC_005263.2 + 24544 0.67 0.582364
Target:  5'- gGCGgcgGCGCgGGCGGCggCGGcUGcGCCa -3'
miRNA:   3'- -UGUa--CGCG-CUGCCGuaGCC-AUaCGGc -5'
24313 3' -56.1 NC_005263.2 + 24831 0.7 0.380341
Target:  5'- uACG-GC-CGGCGGCAaCGGcgGUGCCGg -3'
miRNA:   3'- -UGUaCGcGCUGCCGUaGCCa-UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 26001 0.78 0.123119
Target:  5'- aGCGUGC-CGGCGGCAgccgucacgccUGGUGUGCCGg -3'
miRNA:   3'- -UGUACGcGCUGCCGUa----------GCCAUACGGC- -5'
24313 3' -56.1 NC_005263.2 + 26192 0.67 0.582364
Target:  5'- uGCGgccGCGCGGCGGCcgcgcgaugCGGcg-GCCGu -3'
miRNA:   3'- -UGUa--CGCGCUGCCGua-------GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 26512 0.68 0.476089
Target:  5'- aACuguUGCGCG-CGGCGUCGac--GCCGg -3'
miRNA:   3'- -UGu--ACGCGCuGCCGUAGCcauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 27131 0.66 0.648568
Target:  5'- cGCAgGCGCGcaGCcGCGUCGGcgAUGuCCGa -3'
miRNA:   3'- -UGUaCGCGC--UGcCGUAGCCa-UAC-GGC- -5'
24313 3' -56.1 NC_005263.2 + 27375 0.67 0.560533
Target:  5'- aGCG-GCGCGGCGGCGgcCGGcgcGCUGa -3'
miRNA:   3'- -UGUaCGCGCUGCCGUa-GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 27694 0.7 0.389327
Target:  5'- -uGUGCGCGcCGGCGcCGGcg-GCCGc -3'
miRNA:   3'- ugUACGCGCuGCCGUaGCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 27774 0.67 0.586752
Target:  5'- ---gGUGCGGCGGCAggccaugcuucgcgCGGUAcaucGCCGu -3'
miRNA:   3'- uguaCGCGCUGCCGUa-------------GCCAUa---CGGC- -5'
24313 3' -56.1 NC_005263.2 + 27966 0.69 0.426624
Target:  5'- cCcgGCGCGACGGCcguaccGUCGcgcuUGCCGu -3'
miRNA:   3'- uGuaCGCGCUGCCG------UAGCcau-ACGGC- -5'
24313 3' -56.1 NC_005263.2 + 28305 0.68 0.52824
Target:  5'- aAC-UGCGCGaucGCGGCGcgaaUCuGGUcgGCCGc -3'
miRNA:   3'- -UGuACGCGC---UGCCGU----AG-CCAuaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 29355 0.68 0.517626
Target:  5'- -gGUGCGCGAgcaGGCGcCGGUAacccggcGCCGa -3'
miRNA:   3'- ugUACGCGCUg--CCGUaGCCAUa------CGGC- -5'
24313 3' -56.1 NC_005263.2 + 30409 0.66 0.604361
Target:  5'- ---aGCGCGAcCGGCugcagcagGUCGGUGcgGUCGa -3'
miRNA:   3'- uguaCGCGCU-GCCG--------UAGCCAUa-CGGC- -5'
24313 3' -56.1 NC_005263.2 + 30451 0.67 0.538934
Target:  5'- aGCGUgaGCGCGGCGGCcuUCGcGUugcGCCa -3'
miRNA:   3'- -UGUA--CGCGCUGCCGu-AGC-CAua-CGGc -5'
24313 3' -56.1 NC_005263.2 + 30930 0.67 0.538934
Target:  5'- gGCGUacGCGCGAgcugcgcauuCGGCuucUCGGccGUGCCGa -3'
miRNA:   3'- -UGUA--CGCGCU----------GCCGu--AGCCa-UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 32084 0.74 0.224145
Target:  5'- aACGUGCgucacguGCGGCGGCGUCGGUGcGaUCGa -3'
miRNA:   3'- -UGUACG-------CGCUGCCGUAGCCAUaC-GGC- -5'
24313 3' -56.1 NC_005263.2 + 32748 0.67 0.593346
Target:  5'- aGCGUGCGCaguacGACGuucagcgccGCGUCGGgguucucgGUGUCGg -3'
miRNA:   3'- -UGUACGCG-----CUGC---------CGUAGCCa-------UACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.