miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24313 3' -56.1 NC_005263.2 + 1934 0.67 0.538934
Target:  5'- cACGaGCGCGcCGGCAcCGGcgAcGCCGg -3'
miRNA:   3'- -UGUaCGCGCuGCCGUaGCCa-UaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 3242 0.67 0.537861
Target:  5'- gACAgguagGCGCGAUcgccgcgcagacaGGCGUCGaGUAUcGCCu -3'
miRNA:   3'- -UGUa----CGCGCUG-------------CCGUAGC-CAUA-CGGc -5'
24313 3' -56.1 NC_005263.2 + 3764 0.67 0.582364
Target:  5'- ---cGCGCGggcaGCGGCA-CGGUGUucucccacacGCCGa -3'
miRNA:   3'- uguaCGCGC----UGCCGUaGCCAUA----------CGGC- -5'
24313 3' -56.1 NC_005263.2 + 4477 0.68 0.52824
Target:  5'- cCGUGCGCG-CGG-GUCGGcGUGCUu -3'
miRNA:   3'- uGUACGCGCuGCCgUAGCCaUACGGc -5'
24313 3' -56.1 NC_005263.2 + 6864 0.69 0.436276
Target:  5'- aGCGgauUGCgGCGACGGCAUUguccaucgaGGgcuUGCCGg -3'
miRNA:   3'- -UGU---ACG-CGCUGCCGUAG---------CCau-ACGGC- -5'
24313 3' -56.1 NC_005263.2 + 8283 0.75 0.202052
Target:  5'- cACA-GCGCGAgCGGCGUCGGUcgGaUCGu -3'
miRNA:   3'- -UGUaCGCGCU-GCCGUAGCCAuaC-GGC- -5'
24313 3' -56.1 NC_005263.2 + 9087 0.66 0.626455
Target:  5'- aACA-GCGCGAcCGGCAuacccggcuggaUCGuGU-UGCCGa -3'
miRNA:   3'- -UGUaCGCGCU-GCCGU------------AGC-CAuACGGC- -5'
24313 3' -56.1 NC_005263.2 + 9534 0.66 0.604361
Target:  5'- cCGUGCGCGgcagcgaccgacGCGGCGcucgCGGcuUGCCa -3'
miRNA:   3'- uGUACGCGC------------UGCCGUa---GCCauACGGc -5'
24313 3' -56.1 NC_005263.2 + 9886 0.67 0.582364
Target:  5'- cGCAgaGCuucuCGGCGGCcaucgcgagCGGUGUGCCGa -3'
miRNA:   3'- -UGUa-CGc---GCUGCCGua-------GCCAUACGGC- -5'
24313 3' -56.1 NC_005263.2 + 9905 0.68 0.496662
Target:  5'- gUcgGCGCG-CGGCGUCGG---GCCu -3'
miRNA:   3'- uGuaCGCGCuGCCGUAGCCauaCGGc -5'
24313 3' -56.1 NC_005263.2 + 10884 0.66 0.6154
Target:  5'- cACcgGCGCGcgucgugaGCGGCGUaucgccgcgcUGGgggAUGCCGc -3'
miRNA:   3'- -UGuaCGCGC--------UGCCGUA----------GCCa--UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 11290 0.68 0.476089
Target:  5'- uCGUGCGCGACGaGCAgCGGcaauuUAUGgCCu -3'
miRNA:   3'- uGUACGCGCUGC-CGUaGCC-----AUAC-GGc -5'
24313 3' -56.1 NC_005263.2 + 12543 0.67 0.593346
Target:  5'- cACGUuCGCGGCGGCcggCGGc--GCCGu -3'
miRNA:   3'- -UGUAcGCGCUGCCGua-GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 14024 0.7 0.407709
Target:  5'- ---cGCaGCGACGGCGaCGGUucgGCCa -3'
miRNA:   3'- uguaCG-CGCUGCCGUaGCCAua-CGGc -5'
24313 3' -56.1 NC_005263.2 + 14248 0.66 0.604361
Target:  5'- gGCGUGCGgGcUGGCuugCGGcg-GCCGg -3'
miRNA:   3'- -UGUACGCgCuGCCGua-GCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 15480 0.7 0.380341
Target:  5'- cCGUGCuGCGGCGGCG-CGGUGaGCa- -3'
miRNA:   3'- uGUACG-CGCUGCCGUaGCCAUaCGgc -5'
24313 3' -56.1 NC_005263.2 + 16410 0.66 0.637514
Target:  5'- cGCggGUGCGGuacuCGGCGUCGGc--GCUGg -3'
miRNA:   3'- -UGuaCGCGCU----GCCGUAGCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 17334 0.68 0.52824
Target:  5'- cGCAUGCGCGAgGaaGUCGuGcGUGUCGa -3'
miRNA:   3'- -UGUACGCGCUgCcgUAGC-CaUACGGC- -5'
24313 3' -56.1 NC_005263.2 + 18166 0.67 0.582364
Target:  5'- gGCGgcgGCGuUGGCGGCAUCGucuacGUGUCGa -3'
miRNA:   3'- -UGUa--CGC-GCUGCCGUAGCca---UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 19077 0.66 0.6154
Target:  5'- ---cGCGCGucaguACGGCGUCgcGGUGcgcaacgcacUGCCGg -3'
miRNA:   3'- uguaCGCGC-----UGCCGUAG--CCAU----------ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.