miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24313 3' -56.1 NC_005263.2 + 39162 1.09 0.000702
Target:  5'- gACAUGCGCGACGGCAUCGGUAUGCCGa -3'
miRNA:   3'- -UGUACGCGCUGCCGUAGCCAUACGGC- -5'
24313 3' -56.1 NC_005263.2 + 26001 0.78 0.123119
Target:  5'- aGCGUGC-CGGCGGCAgccgucacgccUGGUGUGCCGg -3'
miRNA:   3'- -UGUACGcGCUGCCGUa----------GCCAUACGGC- -5'
24313 3' -56.1 NC_005263.2 + 22374 0.76 0.16713
Target:  5'- aGCGUGuCGauCGGCGGCAUCGGgcagGCCGc -3'
miRNA:   3'- -UGUAC-GC--GCUGCCGUAGCCaua-CGGC- -5'
24313 3' -56.1 NC_005263.2 + 8283 0.75 0.202052
Target:  5'- cACA-GCGCGAgCGGCGUCGGUcgGaUCGu -3'
miRNA:   3'- -UGUaCGCGCU-GCCGUAGCCAuaC-GGC- -5'
24313 3' -56.1 NC_005263.2 + 32084 0.74 0.224145
Target:  5'- aACGUGCgucacguGCGGCGGCGUCGGUGcGaUCGa -3'
miRNA:   3'- -UGUACG-------CGCUGCCGUAGCCAUaC-GGC- -5'
24313 3' -56.1 NC_005263.2 + 37398 0.73 0.269609
Target:  5'- gGC-UGCGCGACGuGCAUCGcGUcgcgcgGCCGu -3'
miRNA:   3'- -UGuACGCGCUGC-CGUAGC-CAua----CGGC- -5'
24313 3' -56.1 NC_005263.2 + 20133 0.71 0.345812
Target:  5'- gGCAaGCGCGACGGUA-CGGccgucgcGCCGg -3'
miRNA:   3'- -UGUaCGCGCUGCCGUaGCCaua----CGGC- -5'
24313 3' -56.1 NC_005263.2 + 45430 0.71 0.362792
Target:  5'- cGCcgGCGCGACacugcaGGCugcCGGUGUcGCCGc -3'
miRNA:   3'- -UGuaCGCGCUG------CCGua-GCCAUA-CGGC- -5'
24313 3' -56.1 NC_005263.2 + 37373 0.7 0.371496
Target:  5'- cGCGUGCGCGACuGCAUCu---UGUCGa -3'
miRNA:   3'- -UGUACGCGCUGcCGUAGccauACGGC- -5'
24313 3' -56.1 NC_005263.2 + 24831 0.7 0.380341
Target:  5'- uACG-GC-CGGCGGCAaCGGcgGUGCCGg -3'
miRNA:   3'- -UGUaCGcGCUGCCGUaGCCa-UACGGC- -5'
24313 3' -56.1 NC_005263.2 + 15480 0.7 0.380341
Target:  5'- cCGUGCuGCGGCGGCG-CGGUGaGCa- -3'
miRNA:   3'- uGUACG-CGCUGCCGUaGCCAUaCGgc -5'
24313 3' -56.1 NC_005263.2 + 27694 0.7 0.389327
Target:  5'- -uGUGCGCGcCGGCGcCGGcg-GCCGc -3'
miRNA:   3'- ugUACGCGCuGCCGUaGCCauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 14024 0.7 0.407709
Target:  5'- ---cGCaGCGACGGCGaCGGUucgGCCa -3'
miRNA:   3'- uguaCG-CGCUGCCGUaGCCAua-CGGc -5'
24313 3' -56.1 NC_005263.2 + 19866 0.7 0.407709
Target:  5'- -gGUGCGCGACucgcaGGUAUCGauGUuUGCCGa -3'
miRNA:   3'- ugUACGCGCUG-----CCGUAGC--CAuACGGC- -5'
24313 3' -56.1 NC_005263.2 + 27966 0.69 0.426624
Target:  5'- cCcgGCGCGACGGCcguaccGUCGcgcuUGCCGu -3'
miRNA:   3'- uGuaCGCGCUGCCG------UAGCcau-ACGGC- -5'
24313 3' -56.1 NC_005263.2 + 6864 0.69 0.436276
Target:  5'- aGCGgauUGCgGCGACGGCAUUguccaucgaGGgcuUGCCGg -3'
miRNA:   3'- -UGU---ACG-CGCUGCCGUAG---------CCau-ACGGC- -5'
24313 3' -56.1 NC_005263.2 + 35757 0.69 0.446051
Target:  5'- cGCggGCGCGguuacuGCGGCuggCGGcGUGCCa -3'
miRNA:   3'- -UGuaCGCGC------UGCCGua-GCCaUACGGc -5'
24313 3' -56.1 NC_005263.2 + 11290 0.68 0.476089
Target:  5'- uCGUGCGCGACGaGCAgCGGcaauuUAUGgCCu -3'
miRNA:   3'- uGUACGCGCUGC-CGUaGCC-----AUAC-GGc -5'
24313 3' -56.1 NC_005263.2 + 26512 0.68 0.476089
Target:  5'- aACuguUGCGCG-CGGCGUCGac--GCCGg -3'
miRNA:   3'- -UGu--ACGCGCuGCCGUAGCcauaCGGC- -5'
24313 3' -56.1 NC_005263.2 + 44065 0.68 0.486323
Target:  5'- -gGUGCuGCGGCGGCAgCGGg--GCUa -3'
miRNA:   3'- ugUACG-CGCUGCCGUaGCCauaCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.