Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24313 | 3' | -56.1 | NC_005263.2 | + | 39162 | 1.09 | 0.000702 |
Target: 5'- gACAUGCGCGACGGCAUCGGUAUGCCGa -3' miRNA: 3'- -UGUACGCGCUGCCGUAGCCAUACGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 1934 | 0.67 | 0.538934 |
Target: 5'- cACGaGCGCGcCGGCAcCGGcgAcGCCGg -3' miRNA: 3'- -UGUaCGCGCuGCCGUaGCCa-UaCGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 12543 | 0.67 | 0.593346 |
Target: 5'- cACGUuCGCGGCGGCcggCGGc--GCCGu -3' miRNA: 3'- -UGUAcGCGCUGCCGua-GCCauaCGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 9087 | 0.66 | 0.626455 |
Target: 5'- aACA-GCGCGAcCGGCAuacccggcuggaUCGuGU-UGCCGa -3' miRNA: 3'- -UGUaCGCGCU-GCCGU------------AGC-CAuACGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 14024 | 0.7 | 0.407709 |
Target: 5'- ---cGCaGCGACGGCGaCGGUucgGCCa -3' miRNA: 3'- uguaCG-CGCUGCCGUaGCCAua-CGGc -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 27966 | 0.69 | 0.426624 |
Target: 5'- cCcgGCGCGACGGCcguaccGUCGcgcuUGCCGu -3' miRNA: 3'- uGuaCGCGCUGCCG------UAGCcau-ACGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 35757 | 0.69 | 0.446051 |
Target: 5'- cGCggGCGCGguuacuGCGGCuggCGGcGUGCCa -3' miRNA: 3'- -UGuaCGCGC------UGCCGua-GCCaUACGGc -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 11290 | 0.68 | 0.476089 |
Target: 5'- uCGUGCGCGACGaGCAgCGGcaauuUAUGgCCu -3' miRNA: 3'- uGUACGCGCUGC-CGUaGCC-----AUAC-GGc -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 9905 | 0.68 | 0.496662 |
Target: 5'- gUcgGCGCG-CGGCGUCGG---GCCu -3' miRNA: 3'- uGuaCGCGCuGCCGUAGCCauaCGGc -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 28305 | 0.68 | 0.52824 |
Target: 5'- aAC-UGCGCGaucGCGGCGcgaaUCuGGUcgGCCGc -3' miRNA: 3'- -UGuACGCGC---UGCCGU----AG-CCAuaCGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 41246 | 0.68 | 0.517626 |
Target: 5'- uCGUGCGCGAgGGCuaccugucgcCGGUcGUGUCGc -3' miRNA: 3'- uGUACGCGCUgCCGua--------GCCA-UACGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 44065 | 0.68 | 0.486323 |
Target: 5'- -gGUGCuGCGGCGGCAgCGGg--GCUa -3' miRNA: 3'- ugUACG-CGCUGCCGUaGCCauaCGGc -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 26001 | 0.78 | 0.123119 |
Target: 5'- aGCGUGC-CGGCGGCAgccgucacgccUGGUGUGCCGg -3' miRNA: 3'- -UGUACGcGCUGCCGUa----------GCCAUACGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 33336 | 0.68 | 0.517626 |
Target: 5'- gGCGUGCGCGuCgGGCAgcuuugcgacuUCGGcauaGUGCUGa -3' miRNA: 3'- -UGUACGCGCuG-CCGU-----------AGCCa---UACGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 37398 | 0.73 | 0.269609 |
Target: 5'- gGC-UGCGCGACGuGCAUCGcGUcgcgcgGCCGu -3' miRNA: 3'- -UGuACGCGCUGC-CGUAGC-CAua----CGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 26512 | 0.68 | 0.476089 |
Target: 5'- aACuguUGCGCG-CGGCGUCGac--GCCGg -3' miRNA: 3'- -UGu--ACGCGCuGCCGUAGCcauaCGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 17334 | 0.68 | 0.52824 |
Target: 5'- cGCAUGCGCGAgGaaGUCGuGcGUGUCGa -3' miRNA: 3'- -UGUACGCGCUgCcgUAGC-CaUACGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 27774 | 0.67 | 0.586752 |
Target: 5'- ---gGUGCGGCGGCAggccaugcuucgcgCGGUAcaucGCCGu -3' miRNA: 3'- uguaCGCGCUGCCGUa-------------GCCAUa---CGGC- -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 15480 | 0.7 | 0.380341 |
Target: 5'- cCGUGCuGCGGCGGCG-CGGUGaGCa- -3' miRNA: 3'- uGUACG-CGCUGCCGUaGCCAUaCGgc -5' |
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24313 | 3' | -56.1 | NC_005263.2 | + | 6864 | 0.69 | 0.436276 |
Target: 5'- aGCGgauUGCgGCGACGGCAUUguccaucgaGGgcuUGCCGg -3' miRNA: 3'- -UGU---ACG-CGCUGCCGUAG---------CCau-ACGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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