miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 3' -58.5 NC_005263.2 + 42123 1.06 0.000608
Target:  5'- gAUAGCGUCGUGCUGCGCGACGAGGCGu -3'
miRNA:   3'- -UAUCGCAGCACGACGCGCUGCUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 16425 0.74 0.150712
Target:  5'- -cGGCGUCG-GCgcugGCGCGGCG-GGCc -3'
miRNA:   3'- uaUCGCAGCaCGa---CGCGCUGCuCCGc -5'
24318 3' -58.5 NC_005263.2 + 9462 0.74 0.163564
Target:  5'- uUGGCGUCGa--UGCGCGACGcGGCu -3'
miRNA:   3'- uAUCGCAGCacgACGCGCUGCuCCGc -5'
24318 3' -58.5 NC_005263.2 + 1173 0.72 0.192252
Target:  5'- -cGGCGacuugugccUCGUGCUGCGCGGC-AGcGCGu -3'
miRNA:   3'- uaUCGC---------AGCACGACGCGCUGcUC-CGC- -5'
24318 3' -58.5 NC_005263.2 + 36501 0.72 0.213752
Target:  5'- -aGGCGaaGUGCUGCGCcacuucaucGCGGGGCGc -3'
miRNA:   3'- uaUCGCagCACGACGCGc--------UGCUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 1427 0.71 0.237285
Target:  5'- --cGCGcCGccuugGCUGCGCG-CGAGGCu -3'
miRNA:   3'- uauCGCaGCa----CGACGCGCuGCUCCGc -5'
24318 3' -58.5 NC_005263.2 + 5477 0.71 0.237285
Target:  5'- -cGGCGcugcuUCGUGCUGCuCGACagGGGGCGc -3'
miRNA:   3'- uaUCGC-----AGCACGACGcGCUG--CUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 37387 0.71 0.243497
Target:  5'- --uGCGUCGcccugGCUGCGCGACGu-GCa -3'
miRNA:   3'- uauCGCAGCa----CGACGCGCUGCucCGc -5'
24318 3' -58.5 NC_005263.2 + 4176 0.71 0.249844
Target:  5'- --cGCGcUCGUGCUGCaGCGGCGuGuGCu -3'
miRNA:   3'- uauCGC-AGCACGACG-CGCUGCuC-CGc -5'
24318 3' -58.5 NC_005263.2 + 31007 0.71 0.256328
Target:  5'- -cAGa-UCGUGCagcaGUGCGGCGAGGCGc -3'
miRNA:   3'- uaUCgcAGCACGa---CGCGCUGCUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 1132 0.69 0.305604
Target:  5'- --cGCGcCGUGCUGCGCacGGCGuuGCa -3'
miRNA:   3'- uauCGCaGCACGACGCG--CUGCucCGc -5'
24318 3' -58.5 NC_005263.2 + 15467 0.69 0.336879
Target:  5'- -gAGCGacgauuugcCGUGCUGCgGCGGCGcGGUGa -3'
miRNA:   3'- uaUCGCa--------GCACGACG-CGCUGCuCCGC- -5'
24318 3' -58.5 NC_005263.2 + 44161 0.69 0.345053
Target:  5'- -aGGC-UCGcugGCUgGCGCGuGCGAGGCGc -3'
miRNA:   3'- uaUCGcAGCa--CGA-CGCGC-UGCUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 20866 0.68 0.353369
Target:  5'- -gAGCGUCGcaacggcGCUGCGCcaguGGCagGAGGCGc -3'
miRNA:   3'- uaUCGCAGCa------CGACGCG----CUG--CUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 18877 0.68 0.361825
Target:  5'- -cGGCG-CGccGCUGCGCGcCGAcGGCa -3'
miRNA:   3'- uaUCGCaGCa-CGACGCGCuGCU-CCGc -5'
24318 3' -58.5 NC_005263.2 + 42049 0.68 0.370421
Target:  5'- -cGGCGcgCGUGaaGCGCGccgccaacgaACGGGGCGu -3'
miRNA:   3'- uaUCGCa-GCACgaCGCGC----------UGCUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 3900 0.68 0.370421
Target:  5'- cAUGGUGUCGUGgUaGCGCcgGGCGGcaauGGCGg -3'
miRNA:   3'- -UAUCGCAGCACgA-CGCG--CUGCU----CCGC- -5'
24318 3' -58.5 NC_005263.2 + 24702 0.68 0.379156
Target:  5'- -cGGCGcgccgaaCGUGCcGgGCGGCGcAGGCGg -3'
miRNA:   3'- uaUCGCa------GCACGaCgCGCUGC-UCCGC- -5'
24318 3' -58.5 NC_005263.2 + 3175 0.68 0.379156
Target:  5'- cGUGGCG-CGgaauaacugccGCUGCGCGucgGCGAGcGCGg -3'
miRNA:   3'- -UAUCGCaGCa----------CGACGCGC---UGCUC-CGC- -5'
24318 3' -58.5 NC_005263.2 + 3993 0.68 0.379156
Target:  5'- -cGGCGUUaagcUGCUGCGUGACcucgaAGGCGc -3'
miRNA:   3'- uaUCGCAGc---ACGACGCGCUGc----UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.