miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24318 3' -58.5 NC_005263.2 + 1132 0.69 0.305604
Target:  5'- --cGCGcCGUGCUGCGCacGGCGuuGCa -3'
miRNA:   3'- uauCGCaGCACGACGCG--CUGCucCGc -5'
24318 3' -58.5 NC_005263.2 + 1173 0.72 0.192252
Target:  5'- -cGGCGacuugugccUCGUGCUGCGCGGC-AGcGCGu -3'
miRNA:   3'- uaUCGC---------AGCACGACGCGCUGcUC-CGC- -5'
24318 3' -58.5 NC_005263.2 + 1427 0.71 0.237285
Target:  5'- --cGCGcCGccuugGCUGCGCG-CGAGGCu -3'
miRNA:   3'- uauCGCaGCa----CGACGCGCuGCUCCGc -5'
24318 3' -58.5 NC_005263.2 + 3175 0.68 0.379156
Target:  5'- cGUGGCG-CGgaauaacugccGCUGCGCGucgGCGAGcGCGg -3'
miRNA:   3'- -UAUCGCaGCa----------CGACGCGC---UGCUC-CGC- -5'
24318 3' -58.5 NC_005263.2 + 3900 0.68 0.370421
Target:  5'- cAUGGUGUCGUGgUaGCGCcgGGCGGcaauGGCGg -3'
miRNA:   3'- -UAUCGCAGCACgA-CGCG--CUGCU----CCGC- -5'
24318 3' -58.5 NC_005263.2 + 3993 0.68 0.379156
Target:  5'- -cGGCGUUaagcUGCUGCGUGACcucgaAGGCGc -3'
miRNA:   3'- uaUCGCAGc---ACGACGCGCUGc----UCCGC- -5'
24318 3' -58.5 NC_005263.2 + 4089 0.67 0.406175
Target:  5'- -cGGUG-CGUugUGCGCGACGAauGGCGa -3'
miRNA:   3'- uaUCGCaGCAcgACGCGCUGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 4176 0.71 0.249844
Target:  5'- --cGCGcUCGUGCUGCaGCGGCGuGuGCu -3'
miRNA:   3'- uauCGC-AGCACGACG-CGCUGCuC-CGc -5'
24318 3' -58.5 NC_005263.2 + 4357 0.67 0.453789
Target:  5'- uUAGUGUUGUGUcaaUGCGCGgucagcgcauGCGGucGGCGa -3'
miRNA:   3'- uAUCGCAGCACG---ACGCGC----------UGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 5477 0.71 0.237285
Target:  5'- -cGGCGcugcuUCGUGCUGCuCGACagGGGGCGc -3'
miRNA:   3'- uaUCGC-----AGCACGACGcGCUG--CUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 9462 0.74 0.163564
Target:  5'- uUGGCGUCGa--UGCGCGACGcGGCu -3'
miRNA:   3'- uAUCGCAGCacgACGCGCUGCuCCGc -5'
24318 3' -58.5 NC_005263.2 + 14245 0.67 0.415447
Target:  5'- cGUGGCGUgCGgGCUGgcuUGCGGCGGccGGCGc -3'
miRNA:   3'- -UAUCGCA-GCaCGAC---GCGCUGCU--CCGC- -5'
24318 3' -58.5 NC_005263.2 + 15467 0.69 0.336879
Target:  5'- -gAGCGacgauuugcCGUGCUGCgGCGGCGcGGUGa -3'
miRNA:   3'- uaUCGCa--------GCACGACG-CGCUGCuCCGC- -5'
24318 3' -58.5 NC_005263.2 + 16425 0.74 0.150712
Target:  5'- -cGGCGUCG-GCgcugGCGCGGCG-GGCc -3'
miRNA:   3'- uaUCGCAGCaCGa---CGCGCUGCuCCGc -5'
24318 3' -58.5 NC_005263.2 + 18877 0.68 0.361825
Target:  5'- -cGGCG-CGccGCUGCGCGcCGAcGGCa -3'
miRNA:   3'- uaUCGCaGCa-CGACGCGCuGCU-CCGc -5'
24318 3' -58.5 NC_005263.2 + 19057 0.66 0.463672
Target:  5'- --cGCGUCGUGCUauccaaggccGCGCGucaguacgGCGucGCGg -3'
miRNA:   3'- uauCGCAGCACGA----------CGCGC--------UGCucCGC- -5'
24318 3' -58.5 NC_005263.2 + 19855 0.67 0.453789
Target:  5'- -cAGCG-CGUGCaggUGCGCGACucgcAGGUa -3'
miRNA:   3'- uaUCGCaGCACG---ACGCGCUGc---UCCGc -5'
24318 3' -58.5 NC_005263.2 + 20866 0.68 0.353369
Target:  5'- -gAGCGUCGcaacggcGCUGCGCcaguGGCagGAGGCGc -3'
miRNA:   3'- uaUCGCAGCa------CGACGCG----CUG--CUCCGC- -5'
24318 3' -58.5 NC_005263.2 + 23948 0.67 0.453789
Target:  5'- --cGCGUCGUGa-GCGUGACGGuGCc -3'
miRNA:   3'- uauCGCAGCACgaCGCGCUGCUcCGc -5'
24318 3' -58.5 NC_005263.2 + 24702 0.68 0.379156
Target:  5'- -cGGCGcgccgaaCGUGCcGgGCGGCGcAGGCGg -3'
miRNA:   3'- uaUCGCa------GCACGaCgCGCUGC-UCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.